[pdbjlvh2]Protein Model on 5a9q_X

Protein Model on 5a9q_X_1 (TEMPLATE: 5a9q )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(NUP98_HUMAN)	X 1 (N)	polymer(polypeptide(L)) [417 aa]	NUCLEAR PORE COMPLEX PROTEIN NUP96 :NUP98_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5a9q_X_1 identity=87.8%

queryA      1157:GEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDEDMKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEA:1256
                :********************************* ****************   *******************************  **********    :
5a9q_X_1     277:GEQLNGSHELENHQIADSMEFGFLPNPVAVKPLXESPFKVHLEKLSLRQRXXXEDMKLYQTPLELKLKHSTVHVDELCPLIVPNXXVAVIHDYADWXXXX: 376
SecStr          : HHHHHHHHHHHHT     EEE SSS EEE   -  SSS EEE       --- HHHHSHHHHHHHHHH  B   SSS  B   --   HHHHHH ----:    
ExpBur          :eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeebe-eeeeeeeeeeeeeeee---eebeeeeeeeeeeeeeeeeeeeeeeebeeee--eeeeeeeeee----:    

queryA      1257:SGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDH:1356
                :      **************************************************************  ******************************:
5a9q_X_1     377:XXXXXXAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLXXKNSPVEAVFSYLTGKRISEACSLAQQSGDH: 476
SecStr          :------  SSSHHHHHHHHHHHHHS     S   SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH --  SSHHHHHHHHHHT HHHHHHHHHHHT H:    
ExpBur          :------eeeebeebeebeeebeeeeeeeeeeeeeeeebeeebeeebeeeeeeeeeeebeeebeeeeee--eeeeeeebbebeeeebeeebbeebeeeeee:    

queryA      1357:RLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNT:1456
                :*******************************  ****************** ***** ***************************************** :
5a9q_X_1     477:RLALLLSQFVGSQSVRELLTMQLVDWHQLQAXXFIQDERLRIFALLAGKPVXQLSEKXQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNX: 576
SecStr          :HHHHHHHTTT  STHHHHHHHHHHHHTTS  --   HHHHHHHHHHHS   -  S  -  THHHHS HHHHHHHHHHHS TTTS HHHHHHHHHHHS  -:    
ExpBur          :eebeebeeeeeeeeebeebeeebeebeeeee--eeeebeeeebbeebebee-eeeee-eeeeeeeeeeebeebebeebeeeeeeeeeeeeeebeeeeee-:    

queryA      1457:SDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQL:1556
                :                              ***************** ****************************************************:
5a9q_X_1     577:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRDVCFHLLKLYSDRHXDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQL: 676
SecStr          :------------------------------  S HHHHHHHHHHT  - HHHHHHHHHTT   S HHHHHHHHHHHHHHTSS   HHHHHHHHHHHHHHH:    
ExpBur          :------------------------------eeeeeebbeeeeebbee-ebeeeeeeeeeeeeeeeeeeebeebebbeeeeeeeeeeeebeebbeebbebb:    

queryA      1557:ESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKH:1631
                :****************************************    *******************************:
5a9q_X_1     677:ESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPXXXXKETFLTQKLRVPAKWIHEAKAVRAHMESDKH: 751
SecStr          :HHHT HHHHHHHHHT S HHHHHHHHHHHHHHHHHHHH  ---- HHHHHHHTT  HHHHHHHHHHHHHHHT   :    
ExpBur          :eeeeebebbeeebeebeeeeebeeeeeeeeeebbeeeeee----eebeeeeeebeeeebeeebeeeebeeeeeee:

Protein Model on 5a9q_X_1 (TEMPLATE: 5a9q )

Input Residue Numbers for Focused Sites