[pdbjlvh2]Protein Model on 7peq_U_2_V

Protein Model on 7peq_U_2_V_2 (TEMPLATE: 7peq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	U 2 (CE)	polymer(polypeptide(L)) [543 aa]	Nuclear pore complex protein Nup96 :NUP98_HUMAN
2	b		V 2 (CF)	polymer(polypeptide(L)) [285 aa]	Protein SEC13 homolog :SEC13_HUMAN	1514S 1577I 1587T 1622V 1626M 1627E 1656S 1733I 1734Q 1735C 1736Y (identity: 100.0 %/92.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7peq_U_2 identity=92.0%

queryA      1213:KLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSC:1312
                :****************************************************************************************************:
7peq_U_2     333:KLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSC: 432
SecStr          :  SHHHHHHHHTTEEEEE SS EEEEEE    STT SGGGSTT SSSSSTTTTSHHHHHHHHHHHHHSS    SS  S  SS SHHHHHHHHHHHHHHHH:    
ExpBur          :eeeeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebbeebeeeeeeeeeeeeebeeeeeebeeebeeeeeeeeeeeeeeeeeeeebeeebeeeeeeebbe:    

queryA      1313:TATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSE:1412
                :****************************************************************************************************:
7peq_U_2     433:TATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSE: 532
SecStr          :HHHHHHTTHHHHHTTT TTHHHHHHGGGT HHHHHHHHHTTT SHHHHHTT  S  STHHHHHHHHHHHHHSTTTTTT  HHHHHHHHHTTT SSSS ST:    
ExpBur          :eeeeeeeeeeeeeeeeeeebebeebeeeebeeebbeebeeeeeeeebeeeeeeeeeeeebeebeeeeeebeeeeeeeeeeebeeeeebeeeebeeeeeee:    

queryA      1413:KKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEP:1512
                :*******************************************                               **************************:
7peq_U_2     533:KKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRDVCFHLLKLYSDRHYDLNQLLEP: 632
SecStr          :T  GGGTTTS HHHHHHHHHSSS TTTS HHHHHHHHHHSS  ------------------------------- SS HHHHHTTSSSGGGS HHHHHHH:    
ExpBur          :beeeeeeeeeeeebeebeeeebbeeeeeeeeeeeeebeeeeee-------------------------------eeebeebeeeeeebebeeebeeeeee:    

queryA      1513:RSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVP:1612
                :****************************************************************************************************:
7peq_U_2     633:RSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVP: 732
SecStr          :HHTT   S HHHHHHHHHHHHTTT S   HHHHHHHHHHHHHHHHHHT SHHHHHHHHS S HHHHHHHHHHHHHH  TTS  TTT  STTTTTGGGT  :    
ExpBur          :eeeeeeeeeebbebbebeebeeeeeeeeeeeeeeebbeebbeebeeeebbebbeebbeeeeeeeebeeeeeeebeeebeebbeeeebebeebbbeeebee:    
Contact         : b                                                              b         b                         

queryA      1613:AKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCS:1712
                :****************************************************************************************************:
7peq_U_2     733:AKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCS: 832
SecStr          :  HHHHHHHHHHHHHS HHHHHHHHHTTT  SS HHHHHHHHGGG   TT HHHHHHHHHHHHHHHHHTT  S  HHHHHHHHHHHHHHHHHH SS  S :    
ExpBur          :eeebbebbbebeeeeeeeeebbeeebeeebbeeeeeebeebebeeeeeeeebeeebeebeeeeeebeeeeeeeeeeeeebeeebbeeeeeeeeeeeeeee:    
Contact         :         b   bb                            b                                                        

queryA      1713:GNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELR:1802
                :******************************************                ********************************:
7peq_U_2     833:GNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLXXXXXXXXXXXXXXXXSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELR: 922
SecStr          : SHHHHHHHHHHHHHTHHHHT     HHHHHHHHHHH  TTT----------------S         TTTSTTTT    S HHHHHH  :    
ExpBur          :eeeeeebeebbeeeeebeeeeeeeeeeebeeeeeeebeeeee----------------eeeeeeeeeeeeebeeeeeeeeeeeeeeeeee:    
Contact         :                    bbbb

Protein Model on 7peq_U_2_V_2 (TEMPLATE: 7peq )

Input Residue Numbers for Focused Sites