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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(NUP98_HUMAN) | QC 8 (V1) | polymer(polypeptide(L)) [511 aa] | NUP96 | |
2 | b | MC 8 (U1) | polymer(polypeptide(L)) [419 aa] | NUP107 NTD | 1344S(V) 1347C(S) 1348S(K) 1351Q(I) 1353S 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1361L 1363S 1365F(Y) 1368S 1369Q(N) 1370S(D) 1371V(I) 1374L 1375L(A) 1378Q 1382W 1388D(G) 1389S(C) 1390F(S) 1391I 1392Q(D) 1395R(I) (identity: 31.0 %/26.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7tbj_QC_8 identity=26.4% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398 :** * * *** * * ** * ** * * * * ** * * ** * * *: 7tbj_QC_8 173:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 267 SecStr :HHHHHHHHHHHHHHHHHHHHHHH--H HHHHHHHHHHTT HHHHHHHHHHTT HHHHHHHT-TTTS HHHHHHHHHHHHHHTT--T S HHHHHH: ExpBur :ebbeebbebbeeebbeebeeebe--ebeeebebbbbbbbbeebeebbebbeebeeeebbeebe-ebeebeeeebeebeeebeeeee--eeeeeeebbbbb: Contact : b bb b bbbbbbbbb b b bbb b bb b b bbbbb b queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498 : ** * * * * * * * * * * * * * * * **: 7tbj_QC_8 268:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 344 SecStr :HHHHHT SSSSSS GGGGG--GTS HHHHHHHHHHSTTTTTS HHHHHHHHHTT TT ------HHHHHHH----HHHHGGGHH-----------HH: ExpBur :bbbbbbebbeeeeebeebe--eebebbbbbbbbbbbbbbeeeebeebbebbbeebebeeee------eebbbbe----bbbbeeebe-----------eb: queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598 :* * * * ** * * ** * * *** * ** * * * ** : 7tbj_QC_8 345:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 430 SecStr :HH----------HHHHH - SS HHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHTT HHHHHHHHTT S HHHHHHHHHHHHHHHTTTTSS---: ExpBur :be----------ebeeeb-eebeebbbbbbbbbbebeeebebeeebbbebbeebbebbbebebbbbbbbbbbbbbeeebbeebbeebbeebbeebee---: queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627 : * * * * * *: 7tbj_QC_8 431:-STNDHILNRLKIPSQLIFNAQALKDRYE: 458 SecStr :-SHHHHHHHTTT HHHHHHHHHHHHHHH: ExpBur :-eebbeebbebebbeebbeebeeeeeeee: |