[pdbjlvh2]Protein Model on 7r5j_NB_7_YB

Protein Model on 7r5j_NB_7_YB_7 (TEMPLATE: 7r5j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	NB 7 (M3)	polymer(polypeptide(L)) [673 aa]	Nuclear pore complex protein Nup96 :NUP98_HUMAN
2	b		YB 7 (P2)	polymer(polypeptide(L)) [655 aa]	Nuclear pore complex protein Nup85 :NUP85_HUMAN	1327K 1328N (identity: 100.0 %/95.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7r5j_NB_7 identity=95.3%

queryA      1112:RRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDED:1211
                :*************************************************                                 ******************:
7r5j_NB_7    232:RRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKVHLEKLSLRQRKPDED: 331
SecStr          :        GGG TTTT TT TT HHHHTTT    EEETTTEEEESSS  ---------------------------------   EEEE  SSS  HHHH:    
ExpBur          :eeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeebebeeeee---------------------------------eeeeebeeebeeeeeeee:    

queryA      1212:MKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLS:1311
                :****************************************************************************************************:
7r5j_NB_7    332:MKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLS: 431
SecStr          :THHHHHHHHHHTTSEEEE SSSS EEEE SSSHHHHHHHHHHHHHTSS TTHHHHHHHHHHHHHHHHHH   SSSTT SS   HHHHHHHHHHHHHHHHH:    
ExpBur          :bebbeebbebbbebbeeeeeeebbebebeeeeebbeebbebbeeeeeeeebeebbebbbbbbebbbbbbbeeeebeeeeeeeeeeeeebbebebbbebbb:    

queryA      1312:CTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLS:1411
                :****************************************************************************************************:
7r5j_NB_7    432:CTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLS: 531
SecStr          :HTTHHHHHHHHHHHTTT HHHHHHHHHHTT HHHHHHHHHHHT HHHHHHHHTTTT HHHHHHHHHHHHHHHHTT GGGS HHHHHHHHHHTT SEEE T:    
ExpBur          :ebbbeebeeebeebeeebebebbbbbbbbebbeebbebbeeeebeebbeebeebeeeeebbeebeeebeeeeeeeebeeeeeebbbbbbbbbeeeebebe:    
Contact         :               bb                                                                                   

queryA      1412:EKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLE:1511
                :****************************************************************************************************:
7r5j_NB_7    532:EKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLE: 631
SecStr          :TS EEETTTT  HHHHHHHHHHTSS TT  HHHHHHHHHTTTS  SS    S     TTTTTS       SS  S    HHHHHHHHHH TTS SHHHHS:    
ExpBur          :eeeebebbeebbbbbbbbbbbbbbbeeeeebeebbebbbebbeeeeeeeebbebbbbeeebeeeeeeeeeeeeeeeebbbbbbbbebeeeeebebeebbe:    

queryA      1512:PRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRV:1611
                :****************************************************************************************************:
7r5j_NB_7    632:PRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRV: 731
SecStr          :GGGT S TT  HHHHHHHHHHTTTT   S HHHHHHHHHHHHHHHHHTT HHHHHHHHTT S HHHHHHHHHHHHHHH  SS  HHHHHHHHHHHHTS  :    
ExpBur          :bebbbebeebbbbbbbbbbbbbbbebeebeeeebeebbeebbbbbbbeebbbbbbbbbbbbeeeeebbeebeebbeebbebeeeeebeebbbbbeeebeb:    

queryA      1612:PAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDC:1711
                :****************************************************************************************************:
7r5j_NB_7    732:PAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDC: 831
SecStr          : THHHHHHHHHHHHHTT HHHHHHHHHTSS HHHHHHHHHHHTHHHHHHTT HHHHHHHHHHH SHHHHTTSTT TTTHHHHHHHHHHHHHHHHHTTS  :    
ExpBur          :eeebbbbbbbeebeeeeebeebbebbbeeeeebebbebbbeebbbebbeeeebeebeebbeebeeeeebeebeebeebbbbbbbbbebbebbeebeeeee:    

queryA      1712:SGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRE:1811
                :****************************************************************************************************:
7r5j_NB_7    832:SGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRE: 931
SecStr          : HHHHHHHHHHHHHHHHHHTT    SHHHHHHHHHHHHHHHHHHHHHHHHHS   TT      TTSS HHHHHHHHTT    HHHHHHHHHHHHHHHHHH:    
ExpBur          :eeeebeebeeebeebbebbeebeeeeeebeebbbebbeebbebbbebbbeeeeeeeeeeeeeeeeebeeeebeeebeebebeeeeeeebeeebeebeeee:    

queryA      1812:LAVGSL:1817
                :******:
7r5j_NB_7    932:LAVGSL: 937
SecStr          :HHTT  :    
ExpBur          :eeeeee:

Protein Model on 7r5j_NB_7_YB_7 (TEMPLATE: 7r5j )

Input Residue Numbers for Focused Sites