CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(NUP98_HUMAN) | MB 4 (M2) | polymer(polypeptide(L)) [673 aa] | Nuclear pore complex protein Nup96 :NUP98_HUMAN | |
2 | b | V 3 (A6) | polymer(polypeptide(L)) [726 aa] | Nuclear pore complex protein Nup93 :NUP93_HUMAN | 1299I 1441S 1443S 1444R 1499Y 1500S 1501D 1502R 1503H 1537Y 1538T 1539H (identity: 100.0 %/95.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7r5k_MB_4 identity=95.3% |
queryA 1112:RRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDED:1211 :************************************************* ******************: 7r5k_MB_4 232:RRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKVHLEKLSLRQRKPDED: 331 SecStr : GGG TTTT TT TT HHHHTTT EEETTTEEE SS --------------------------------- EEE SSS HHHH: ExpBur :eeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeebebeeeee---------------------------------eeeeeeeeebeeeeeeee: queryA 1212:MKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLS:1311 :****************************************************************************************************: 7r5k_MB_4 332:MKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLS: 431 SecStr :THHHHHHHHHHTTSEEEE SSSS EEEE SSSTHHHHHHHHHHHHTTT TTHHHHHHHHHHHHHHHHHT SSSGGG SS HHHHHHHHHHHHHHHHH: ExpBur :bebbeebbebbbebbeeeeeeebbebebeeeeebbbebbebbeebeeeeebeebbebbbebbebbebbbbbeeebeeeeeeeeeebeeebbbebbbebbb: Contact : b queryA 1312:CTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLS:1411 :****************************************************************************************************: 7r5k_MB_4 432:CTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLS: 531 SecStr :HTTHHHHHHHHHHHTTT HHHHHHHHHHTT HHHHHHHHHHHT HHHHHHHHTTTT HHHHHHHHHHHHHHHHTT GGGS HHHHHHHHHHTT SEEE T: ExpBur :ebbeeebeeebeebeeebebebbbbbbbbebbeebbebbeeeebeebbeebeebeeeeebbeebeeebeeeeeeeebeeeeeebbbbbbbbbeeeebebe: queryA 1412:EKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLE:1511 :****************************************************************************************************: 7r5k_MB_4 532:EKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLE: 631 SecStr :TS EEETTTT HHHHHHHHHHTSS TT HHHHHHHHHHHHS SS S TTTTTS SS S HHHHHHHHHH TTS SHHHHS: ExpBur :eeeebebbeebbbbbbbbbbbbbbbeeeeebeebbebbbebbeeeeeeeebbeebbbeeeeeeeeeeeeeeeeeeeebbbbbbbbebeeeeebebeebbe: Contact : b bb bbbbb queryA 1512:PRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRV:1611 :****************************************************************************************************: 7r5k_MB_4 632:PRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRV: 731 SecStr :GGGT S TT HHHHHHHHHHTTTT S HHHHHHHHHHHHHHHHHTT HHHHHHHHTT S HHHHHHHHHHHHHHH SS HHHHHHHHHHHHTS : ExpBur :bebbbebeebbbbbbbbbbbbbbbebeebeeeebeebbeebbbbbbbbebbbbbbbbbbbbeeeeebbeebeebbeebbebeeeeebeebbbbbeeebeb: Contact : bbb queryA 1612:PAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDC:1711 :****************************************************************************************************: 7r5k_MB_4 732:PAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDC: 831 SecStr : HHHHHHHHHHHHHHT HHHHHHHHHTTT HHHHHHHHHHHTHHHHHHTT HHHHHHHHHHH SHHHHTT TT TTTHHHHHHHHHHHHHHHHHTTS : ExpBur :eeebbbebbbeebeeeeeeeebbebbbeeeebeebbebbbeebbbebbeeeebeebbebbeebeeeebbeebeebeebbbbbbbbbebbebbeebeeeee: queryA 1712:SGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRE:1811 :****************************************************************************************************: 7r5k_MB_4 832:SGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRE: 931 SecStr : HHHHHHHHHHHHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHHHS TT GGGS HHHHHHHHTTS HHHHHHHHHHHHHHHHHH: ExpBur :eeeebeebeeebeebbebbeebebeeeebeebbbebbeebbebbbebbbeeeeeeeeeeeeeeeeebeeeebeeebeebebeeebeeebeeebeebeeee: queryA 1812:LAVGSL:1817 :******: 7r5k_MB_4 932:LAVGSL: 937 SecStr :HHTT : ExpBur :eeeeee: |