Protein Model on 7n9f_MA_4_PA_4
(TEMPLATE: 
7n9f
)Protein Model on 7n9f_MA_4_PA_4
(TEMPLATE: 7n9f
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | MA 4 (j) | polymer(polypeptide(L)) [559 aa] | Nucleoporin 145c :NU145_YEAST | |
| 2 | b | PA 4 (m) | polymer(polypeptide(L)) [649 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1343I(V) 1344S(V) 1348S(K) 1351Q(I) 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1363S 1365F(Y) 1368S 1369Q(N) 1370S(D) 1374L 1377M(L) 1378Q 1381D(K) 1382W 1388D(G) 1389S(C) 1390F(S) 1391I 1392Q(D) 1399F(Y) 1438P(D) (identity: 25.0 %/24.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7n9f_MA_4 identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
7n9f_MA_4 264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358
SecStr :HHHHHHHHHHHHTTHHHHTTTTT--T HHHHHHHHHHTT HHHHHHHHTTTT SSSSSSS - SSS SHHHHHHHHHHHHHSS--S TTHHHH:
ExpBur :bbbebbbebbbeebbeebeebbe--ebeeeebebbbbbbeeeeeebbeebeeeeeeeebebbe-bbeebbeebbeebeeebeebee--eeeeeeebebbb:
Contact : bb b b bbbbbbb b b bbbbb b bb bb bbbbb
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
7n9f_MA_4 359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435
SecStr :HHHTTTSTTSSSS TTSS --SS HHHHHHHHHHHS SSSS HHHHHHHHHHH SSS------TTTTTTH----HHH SSSHH-----------HH:
ExpBur :bbbbbbbbbeeebbbeeee--ebbeebbbbbbbbbbbbbeeeebbebbeebbeebebeeee------ebbbbbb----bbbbeeebe-----------eb:
Contact :b b
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
7n9f_MA_4 436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521
SecStr :HH----------HHTTSS- S HHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHTT HHHHHHHGGG SSTTHHHHHHHHHHHH STTTSS---:
ExpBur :be----------ebeeee-ebbbbbbbbbbbbbbbeeeebebeeebbeebbebbbebbbebbebbbbbbbbbbbeeeeebeeebeebbeebbeebee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
: * * * * * * * * * * * * * ** * * *:
7n9f_MA_4 522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616
SecStr :-STTTTTSTTSS HHHHHHHHHHS STTHHHHHHHHHTTS SS TTTTHHHHTT TTHHHHHHHHTTTTTTS BTTB ---- SSSSSH:
ExpBur :-eebbeebbebebebeebebbebeeeeeeeebeeebeebbeeeebeebbbbbbebbbeebeeeeeeeebeebeebbebbeebeeeeeeb----eeebbbb:
queryA 1693:YLDYIRVI:1700
: * :
7n9f_MA_4 617:FEVYLKLV: 624
SecStr :HHHGGGSS:
ExpBur :bebbbebb:
|
[assembly_id:1]
[help]