Protein Model on 7n9f_MA_P_NA_P
(TEMPLATE: 
7n9f
)Protein Model on 7n9f_MA_P_NA_P
(TEMPLATE: 7n9f
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | MA P (j) | polymer(polypeptide(L)) [559 aa] | Nucleoporin 145c :NU145_YEAST | |
| 2 | b | NA P (k) | polymer(polypeptide(L)) [274 aa] | Protein transport protein SEC13 :SEC13_YEAST | 1500S(K) 1513R 1514S(Q) 1543Q(E) 1546G(D) 1547V(E) 1550A(F) 1551S(A) 1554G(A) 1558S(F) 1572I(L) 1574N(D) 1576G(K) 1577I(A) 1580K(D) 1581A(T) 1583R(K) 1584E(R) 1587T(M) 1588R 1622V(L) 1623R(K) 1625H(R) 1626M(Y) 1627E 1628S(G) 1630K(Y) 1645R(L) 1647H(E) 1648K(M) 1652R(T) 1677P(S) 1678E 1679R 1680S(D) (identity: 14.3 %/24.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7n9f_MA_P identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
7n9f_MA_P 264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358
SecStr :HHHHHHHHHHHHTTHHHHTTTTT--T HHHHHHHHHHTT HHHHHHHHTTTT SSSSSSS - SSS SHHHHHHHHHHHHHSS--S TTHHHH:
ExpBur :bbbebbbebbbeebbeebeebbe--ebeeeebebbbbbbeeeeeebbeebeeeeeeeebebbe-bbeebbeebbeebeeebeebee--eeeeeeebebbb:
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
7n9f_MA_P 359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435
SecStr :HHHTTTSTTSSSS TTSS --SS HHHHHHHHHHHS SSSS HHHHHHHHHHH SSS------TTTTTTH----HHH SSSHH-----------HH:
ExpBur :bbbbbbbbbeeebbbeeee--ebbeebbbbbbbbbbbbbeeeebbebbeebbeebebeeee------ebbbbbb----bbbbeeebe-----------eb:
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
7n9f_MA_P 436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521
SecStr :HH----------HHTTSS- S HHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHTT HHHHHHHGGG SSTTHHHHHHHHHHHH STTTSS---:
ExpBur :be----------ebeeee-ebbbbbbbbbbbbbbbeeeebebeeebbeebbebbbebbbebbebbbbbbbbbbbeeeeebeeebeebbeebbeebee---:
Contact : b bb b bb bb b b b b bb bb bb bb
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
: * * * * * * * * * * * * * ** * * *:
7n9f_MA_P 522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616
SecStr :-STTTTTSTTSS HHHHHHHHHHS STTHHHHHHHHHTTS SS TTTTHHHHTT TTHHHHHHHHTTTTTTS BTTB ---- SSSSSH:
ExpBur :-eebbeebbebebebeebebbebeeeeeeeebeeebeebbeeeebeebbbbbbebbbeebeeeeeeeebeebeebbebbeebeeeeeeb----eeebbbb:
Contact : bb bbbb b b bb b bb bbbb
queryA 1693:YLDYIRVI:1700
: * :
7n9f_MA_P 617:FEVYLKLV: 624
SecStr :HHHGGGSS:
ExpBur :bebbbebb:
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[assembly_id:3]
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