Protein Model on 7n84_M_1_P_1
(TEMPLATE: 
7n84
)Protein Model on 7n84_M_1_P_1
(TEMPLATE: 7n84
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | M 1 (n) | polymer(polypeptide(L)) [557 aa] | Nucleoporin 145c :NU145_YEAST | |
| 2 | b | P 1 (q) | polymer(polypeptide(L)) [648 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1343I(V) 1344S(V) 1351Q(I) 1353S 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1361L 1363S 1365F(Y) 1368S 1369Q(N) 1370S(D) 1371V(I) 1372R 1374L 1375L(A) 1377M(L) 1378Q 1381D(K) 1382W 1388D(G) 1389S(C) 1390F(S) 1391I 1392Q(D) 1395R(I) 1399F(Y) 1436L(Q) 1437P(I) 1439T(E) (identity: 28.6 %/24.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7n84_M_1 identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
7n84_M_1 264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358
SecStr :HHHHHHHHHHHHHTHHHHHHHHH--S HHHHHHHHHHTT SHHHHHHHHHTT HHHHHHHT-T S HHHHHHHHHHHHHHHS--S S HHHHHH:
ExpBur :ebbeebbebbbeebbeebeeeee--eeeeebebbbbbbbeeeeeebbebbeeeeeeebbebbe-ebeebeeebeeebeeebeeeee--eeeeeeebebbb:
Contact : bb b bbbbbbbbb b b bbbbbbb bb bb bb bbbbb b
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
7n84_M_1 359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435
SecStr :HHHHTT SSSSS TTS--SSS HHHHHHHHHHHS SSSS HHHHHHHHHHHS SS ------HHHHHHH----HHHT TTHH-----------HH:
ExpBur :bbbbbbbbbeeeeebeebe--eebebbbbbbbbbbbbbebeeebeebbeebbeebebeeee------ebbbbbb----bbbbbeebe-----------eb:
Contact :b bb b
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
7n84_M_1 436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521
SecStr :HH----------HHTTT - SS HHHHHHHHHHHHSS SS HHHHHHHHHHHHHHHHTTT HHHHHHHHTT STTHHHHHHHHHHHH SGGGSS---:
ExpBur :be----------ebeeeb-eebbbbbbbbbbbbbbeeeebebeeebbbebbeebbebbbbeebbbbbbbbbbbbbeeeebeebbeebbeebbeebee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
: * * * * * * * * * * * * * ** * * *:
7n84_M_1 522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616
SecStr :-SHHHHHHHHSS HHHHHHHHHHS SSSSGGGTSGGGTTT SSSS THHHHTTSSTTSSS HHHHTTTTTSSSHHHHS TT ---- SSTTSH:
ExpBur :-eebbbebbeeebeeebbebbebeeeeeeeebeebbbebbeeebbebbbbbbbbbbbeebeeeeeeebbeebbebbebbeeeeeeeebe----beebbbb:
queryA 1693:YLDYIRVI:1700
: * :
7n84_M_1 617:FEVYLKLV: 624
SecStr :HHHHHHHH:
ExpBur :bebbbebe:
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[assembly_id:1]
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