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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(NUP98_HUMAN) | M 1 (G) | polymer(polypeptide(L)) [618 aa] | Nuclear pore complex protein Nup96 :A0A1L8HBE3_XENLA | |
2 | b | L 1 (H) | polymer(polypeptide(L)) [306 aa] | GATOR complex protein SEC13 :Q7ZYJ8_XENLA | 1140G 1142S 1143F 1144R 1145V 1196V 1198L(M) 1199E 1200K 1201L 1202S 1507N(C) 1550A 1554G(A) 1574N(H) 1576G(H) 1577I 1626M(R) (identity: 66.7 %/60.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7wb4_M_1 identity=60.4% |
queryA 1117:LVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDEDMKLYQ:1216 :*** ***** * * ** ** ***************** * ****** ***** * * : 7wb4_M_1 225:LVPLEKSVTHGRGSLLIDMGLFMGRSFRVGWGPNWTLVHNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPFKVHMEKLSLEQK--SRELQSYL: 322 SecStr : TTHHHHHHHHHSTT TTTTTSS GGG --------------------------------- S TT-- HHHHH: ExpBur :eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeebeeeeeee---------------------------------eeeeebeeeeeeeee--eeeeeeee: Contact : b bbbb b bbbbb queryA 1217:TPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQ-IVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTAT:1315 : *** ** * * ** ** *** ***** ** * * ** * ******* *** **** * ** ** **** *** ** ** : 7wb4_M_1 323:MPLEIELKNSSVDRSAQCPHFKPNAGVAAIHDYAGWVRNLSNEAGELEAVVKQWGLTWTLCESLWGQLKELEASLDEPNEYVRNLERRKAFSHWLAHTAE: 422 SecStr :HHHHHHHHT EE SSSS EE STTSSHHHHHHHHHHHHHHHTTS SSHHHHHHHHHHHHHHS SSSTTSS HHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeeeeeeeeeeeeeeeeeebeeeeeeeeeeeeeebeeeeeeeeeeeeeeeebbeeeeebebeeebeeeeeeeeeeeeeeeeeeeebeeeeeebeeeeee: queryA 1316:PQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQ:1415 : ******* ****** *** *** ** *** ****** ***** **** *** ***** ** * ** **** * ** * *** * : 7wb4_M_1 423:ERIEEEVSLYGPERHVEAVFSFLTGGRISDACRLAQKSGDHRLSLLLSQMVGSQEMRELISLQLVDWNKLQVDHYIQEERLRVFCLLSGTPVWRSSDNRS: 522 SecStr :HHHHHHHHHS S TTTHHHHHHHT HHHHHHHGGGTT HHHHHTTS STTTHHHHHHHHHHHHHHT S TTHHHHHHHHS EEE TTS E: ExpBur :eeeeeeeeeeeeebeeeeeeebeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeebebeebeeeeeeebeeeeebe: queryA 1416:INVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQ--TPLRDVCFHLLKLYSDRHYDLNQLLEPR:1513 :*********** ** **** ***** * ** ** *** *** *** *** * **** ******* * *** *** * : 7wb4_M_1 523:INVCSQLDWKRTLAVHLWYMLPPTATIAQALRLYERAFQEHEEGEPYACYPLPPYLEDCSISLGDEPSAKFSSLQRDVCVHLLKLYSERQYDLCQLLDPS: 622 SecStr :EESSSSS HHHHHHHHHHTTS SS HHHHHHHHHHHHS SSS S TTTGGG SS SHHHHTT HHHHHHHHHH S S HHHHT HH: ExpBur :eeeeeeeebebbeeebeeeeeeeeeeeeeeeeebeeebeeeeeeeebbeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeeebeeeeeeeeeeeeeeee: Contact : b queryA 1514:SITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPA:1613 :* * ************ ** ******** * * **** *** ************* *** ***** * * * *** *** ** * ***: 7wb4_M_1 623:SVTPDPLDYRLSWHLWMVLQALNYTHLSEHRQGTLHASYAAQLENVGLWEWAIFVLLHIPHPHIREAGVRELLNRQCVVRESPESLAKENFLIHRLCVPA: 722 SecStr :HH S SS HHHHHHHHHHHHT S HHHHHHHHHHHHHHHHHH HHHHHHHTT S HHHHHHHHHHHHHHH SS HHHHHHHHHHHHTT H: ExpBur :beeeeeeebeebbeebeeeeeeeeeeeeeeeeeeeeeebeeebeeeeeebeeeeeebeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeebeeeeeeee: Contact : b b b bb queryA 1614:KWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCSG:1713 : * ***** * * * *** * * ** **** **** ** ***** ** ** * ** ****** * ********* ** *** **: 7wb4_M_1 723:QWVHEAKAIRSRRDGDRHKEALYLLKGHQWNPCHKLVTRHLAADAVINENYRYLQSFLGELSNPEHCKHIQDWETAGKVYLDYIRVIDMLNLIQQDESSG: 822 SecStr :HHHHHHHHHHHHHS SHHHHHHHHHT HHHHHHHHTTTHHHHHHHTT HHHHHHHHHHHTSTTTTTT TTTTTTHHHHHHHHHHHHHHHHHTTSS S: ExpBur :eeebebbeeebeeeeeeeebeebeeeeeebeeebeeeeeeeeeebeeeeebeeeeeebeeeeeeeeeeebeebeeeeeeebeebeeeeeeeeeeeeeeee: Contact : b queryA 1714:NDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHP:1764 : ** ** ** *** * * ** ******** ******* ******* *: 7wb4_M_1 823:CELEKLHTKVMSLCKWVELIHCYTAKDRLAQSEMAKRVANILRVVLSLQQP: 873 SecStr :HHHHHHHHHHHHHHHHHTT SSHHHHHHHHHHHHHHHHHHHHHHHHH : ExpBur :eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee: |