[pdbjlvh2]Protein Model on 7r5j_LB_4_HB

Protein Model on 7r5j_LB_4_HB_4 (TEMPLATE: 7r5j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	LB 4 (M1)	polymer(polypeptide(L)) [673 aa]	Nuclear pore complex protein Nup96 :NUP98_HUMAN
2	b		HB 4 (L1)	polymer(polypeptide(L)) [782 aa]	Nuclear pore complex protein Nup107 :NU107_HUMAN	1294R 1296Y 1297I 1354G 1355D 1356H 1357R 1360L 1361L 1363S 1364Q 1365F 1366V 1367G 1368S 1371V 1374L 1375L 1378Q 1385L 1387A 1391I 1439T (identity: 100.0 %/95.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7r5j_LB_4 identity=95.3%

queryA      1112:RRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDED:1211
                :*************************************************                                 ******************:
7r5j_LB_4    232:RRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKVHLEKLSLRQRKPDED: 331
SecStr          :        GGG TTTT TT TT HHHHTTT    EEETTTEEEESSS  ---------------------------------   EEEE  SSS  HHHH:    
ExpBur          :eeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeebebeeeee---------------------------------eeeeebeeebeeeeeeee:    

queryA      1212:MKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLS:1311
                :****************************************************************************************************:
7r5j_LB_4    332:MKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLS: 431
SecStr          :HHHHHHHHHHHTTSEEEE SSSS EEEE SSSHHHHHHHHHHHHHTSS TTHHHHHHHHHHHHHHHHHHS  TTSTT SS   HHHHHHHHHHHHHHHHH:    
ExpBur          :bebbeebbebbbebbeeeeeeebbbbebeeeeebbeebbebbeeeeeeeebeebbebbbbbbbbbbbbbbbeebbeeeeeeeeeeeeebbbbebbbebbb:    
Contact         :                                                                                  b bb              

queryA      1312:CTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLS:1411
                :****************************************************************************************************:
7r5j_LB_4    432:CTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLS: 531
SecStr          :HTTHHHHHHHHHHHTTT HHHHHHHHHHTT HHHHHHHHHHHT HHHHHHHHTTTT HHHHHHHHHHHHHHHHTT GGGS HHHHHHHHHHTT SEEE T:    
ExpBur          :ebbeeebeeebeebeeebebebbbbbbbbebbeebbebbeeeebeebbeebeebeeeeebbeebbeebeeeeeeeebeeeeeebbbbbbbbbeeeebebe:    
Contact         :                                          bbbb  bb bbbbbb  b  bb  b      b b   b                    

queryA      1412:EKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLE:1511
                :****************************************************************************************************:
7r5j_LB_4    532:EKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLE: 631
SecStr          :TS EEETTTT  HHHHHHHHHHTSS TT  HHHHHHHHHHHHS  SS        SSGGGTTS       SS  S    HHHHHHHHHH TTS SHHHHS:    
ExpBur          :eeeebebbeebbbbbbbbbbbbbbbeeeeebeebbebbbebbeeeeeeeebbebbebbeebeeeeeeeeeeeeeeeebbbbbbbbebeeeeebebeebbe:    
Contact         :                           b                                                                        

queryA      1512:PRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRV:1611
                :****************************************************************************************************:
7r5j_LB_4    632:PRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRV: 731
SecStr          :GGGT S TT  HHHHHHHHHHTTTT   S HHHHHHHHHHHHHHHHHTT HHHHHHHHTT S HHHHHHHHHHHHHHH  SS  HHHHHHHHHHHHTS  :    
ExpBur          :bebbbebeebbbbbbbbbbbbbbbebeebeeeebeebbeebbbbbbbeebbbbbbbbbbbbeeeeebbeebeebbeebbebeeeeebeebbebbeeebeb:    

queryA      1612:PAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDC:1711
                :****************************************************************************************************:
7r5j_LB_4    732:PAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDC: 831
SecStr          : HHHHHHHHHHHHHHTT HHHHHHHHHTT TTTHHHHHHHHHTHHHHHHTT HHHHHHHHHHH SHHHHTTSTT TTTHHHHHHHHHHHHHHHHHTTS  :    
ExpBur          :eeebbbebbbeebeeeeebeebbebbeeebebeebbebbbeebbbebbeeeebeebbebbeebeeeeeeeebeebeebbbbbbbbbebbebbeebeeeee:    

queryA      1712:SGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRE:1811
                :****************************************************************************************************:
7r5j_LB_4    832:SGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRE: 931
SecStr          : HHHHHHHHHHHHHHHHHHTT    SHHHHHHHHHHHHHHHHHHHHHHHHHS   TT      TTSS HHHHHHHHTT    HHHHHHHHHHHHHHHHHH:    
ExpBur          :eeeebeebeeebeebbebbeebeeeeeebeebbbebbeebbebbbebbbeeeeeeeeeeeeeeeeebeeeebeeebeebebeeeeeeebeeebeebeeee:    

queryA      1812:LAVGSL:1817
                :******:
7r5j_LB_4    932:LAVGSL: 937
SecStr          :HHTT  :    
ExpBur          :eeeeee:

Protein Model on 7r5j_LB_4_HB_4 (TEMPLATE: 7r5j )

Input Residue Numbers for Focused Sites