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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(5a9q_GA auth_asym_id:W) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
1181 | P | 301 | 301 | P | S | e | 72.1 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(NUP98_HUMAN) | GA 1 (W) | polymer(polypeptide(L)) [417 aa] | NUCLEAR PORE COMPLEX PROTEIN NUP96 :NUP98_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5a9q_GA_1 identity=87.8% |
queryA 1157:GEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDEDMKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEA:1256 :********************************* **************** ******************************* ********** : 5a9q_GA_1 277:GEQLNGSHELENHQIADSMEFGFLPNPVAVKPLXESPFKVHLEKLSLRQRXXXEDMKLYQTPLELKLKHSTVHVDELCPLIVPNXXVAVIHDYADWXXXX: 376 SecStr : HHHHHHHHHHHHT EEE SSS EEE - SSS EEE --- HHHHSHHHHHHHHHH B SSS B -- HHHHHH ----: ExpBur :eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeebe-eeeeeeeeeeeeeeee---eebeeeeeeeeeeeeeeeeeeeeeeebeeee--eeeeeeeeee----: queryA 1257:SGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDH:1356 : ************************************************************** ******************************: 5a9q_GA_1 377:XXXXXXAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLXXKNSPVEAVFSYLTGKRISEACSLAQQSGDH: 476 SecStr :------ SSSHHHHHHHHHHHHHS S SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH -- SSHHHHHHHHHTT HHHHHHHHHHHT H: ExpBur :------eeeebeebeebeeebeeeeeeeeeeeeeeeebeeebeeebbeeeeeeeeeeeeeebeeeeee--eeeeeeebbebeeeebeeebbeebeeeeee: queryA 1357:RLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNT:1456 :******************************* ****************** ***** ***************************************** : 5a9q_GA_1 477:RLALLLSQFVGSQSVRELLTMQLVDWHQLQAXXFIQDERLRIFALLAGKPVXQLSEKXQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNX: 576 SecStr :HHHHHHHTTT STHHHHHHHHHHHHTTS -- HHHHHHHHHHHS - S - THHHHS HHHHHHHHHHHS TTTS HHHHHHHHHHHS -: ExpBur :eebeebeeeeeeeeebeebeeebeebeeeee--eeeebeebebbeebbbee-eeeee-eeeeeeeeeeebeebebeebeeeeeeeeeeeeeebeeeeee-: queryA 1457:SDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQL:1556 : ***************** ****************************************************: 5a9q_GA_1 577:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRDVCFHLLKLYSDRHXDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQL: 676 SecStr :------------------------------ S HHHHHHHHHHT - HHHHHHHHHTT S HHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHH: ExpBur :------------------------------eeeeeebeeeeeebbee-ebeeeeeeeeeeeeeeeeeeebeebebbeeeeeeeeeeeebeebbeebbebb: queryA 1557:ESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKH:1631 :**************************************** *******************************: 5a9q_GA_1 677:ESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPXXXXKETFLTQKLRVPAKWIHEAKAVRAHMESDKH: 751 SecStr :HHHT HHHHHHHHHT S HHHHHHHHHHHHHHHHHHHH ---- HHHHHHHTT HHHHHHHHHHHHHHHT : ExpBur :eeeeebebbeeebbebeeeeebeeeeeeeeeebbeeeeee----eebeeeeeebeeeebeeebeeeebeeeeeee: |