[pdbjlvh2]Protein Model on 7n84_F_4_P

Protein Model on 7n84_F_4_P_4 (TEMPLATE: 7n84 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	F 4 (c)	polymer(polypeptide(L)) [559 aa]	Nucleoporin 145c :NU145_YEAST
2	b		P 4 (q)	polymer(polypeptide(L)) [648 aa]	Nucleoporin NUP84 :NUP84_YEAST	1676P(D) 1677P(S) 1678E 1679R 1680S(D) 1681S(K) 1686W 1687E(S) (identity: 37.5 %/24.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7n84_F_4 identity=24.9%

queryA      1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
                :**      *      * ***           *  * **       *  **  *    *  * *   **     * *   **  *        *      *:
7n84_F_4     264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358
SecStr          :HHHHHHHHHHHHTTHHHHHHHHT--T   HHHHHHHHHHH  HHHHTTTTTTTT SSSSS   - SS   SHHHHHHHHHHHHH S--S S   TTHHHH:    
ExpBur          :bbbeebbebbeeebbeebeebbe--ebeeebbbbbbbbbbeeeeebeeebeeeeeeebbebbe-beeeebeebbeebeeebeebee--eeeeeeebbbbb:    

queryA      1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
                :  ** * *   *   *     *   *   *   * *      *           *    *       *            *   *             **:
7n84_F_4     359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435
SecStr          :HHHTTT SS SSS SSS S--SSS HHHHHHHHHHHS TTTS SHHHHHHHHHH    SSS------TTTTTTH----HHH STTHH-----------HH:    
ExpBur          :bbbbbbebbeeebebeebe--eebbebbbbbbbbbbbbbeeeebeebbeebbebbebeeee------bbbbbbb----bbbbeeebe-----------eb:    

queryA      1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
                :*           * *  *   **    * *   **       *           * ***   *     **          *     *  *   **     :
7n84_F_4     436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521
SecStr          :HH----------HHTTS - SS HHHHHHHHHHHHHHTSS   HHHHHHHHHHHHHHHHHTT HHHHHHHTTT   TTHHHHHHHHHHHH GGGSSS---:    
ExpBur          :be----------ebeeee-ebbebbbbbbbbbbbbbeeebebeeebbeebbeebbebbbbbeebbbbbbbbbbbeeeebbeeebeebbeebbeebee---:    

queryA      1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
                :          *  *   *  * *     *     *   *            *         *      *     *   *      **      *  *  *:
7n84_F_4     522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616
SecStr          :-SSSTTTSTTSS   HHHHHHHHHHS  SSSHHHHHHHHHTT S SS TTTSHHHHSS      STTHHHHHHHHTTHHHHS   SS  ---- SSSSTH:    
ExpBur          :-eebbeebbebebeeebbeebbbebeeeeeeebebbebbbebeebeebbeebbbbbbeeeeeeeeeebbeebeebbebbeebeeeeeeb----ebebbeb:    
Contact         :                                                                                   bbbbbb    bb     

queryA      1693:YLDYIRVI:1700
                :   *    :
7n84_F_4     617:FEVYLKLV: 624
SecStr          :HHHGGGSS:    
ExpBur          :bbebbebe:

Protein Model on 7n84_F_4_P_4 (TEMPLATE: 7n84 )

Input Residue Numbers for Focused Sites