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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(NUP98_HUMAN) | F 4 (c) | polymer(polypeptide(L)) [559 aa] | Nucleoporin 145c :NU145_YEAST | |
2 | b | G 4 (d) | polymer(polypeptide(L)) [274 aa] | Protein transport protein SEC13 :SEC13_YEAST | 1500S(K) 1513R 1514S(Q) 1547V(E) 1550A(F) 1554G(A) 1558S(F) 1572I(L) 1577I(A) 1580K(D) 1581A(T) 1583R(K) 1584E(R) 1587T(M) 1589H(E) 1622V(L) 1623R(K) 1625H(R) 1626M(Y) 1627E (identity: 10.0 %/24.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7n84_F_4 identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398 :** * * *** * * ** * ** * * * * ** * * ** * * *: 7n84_F_4 264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358 SecStr :HHHHHHHHHHHHTTHHHHHHHHT--T HHHHHHHHHHH HHHHTTTTTTTT SSSSS - SS SHHHHHHHHHHHHH S--S S TTHHHH: ExpBur :bbbeebbebbeeebbeebeebbe--ebeeebbbbbbbbbbeeeeebeeebeeeeeeebbebbe-beeeebeebbeebeeebeebee--eeeeeeebbbbb: queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498 : ** * * * * * * * * * * * * * * * **: 7n84_F_4 359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435 SecStr :HHHTTT SS SSS SSS S--SSS HHHHHHHHHHHS TTTS SHHHHHHHHHH SSS------TTTTTTH----HHH STTHH-----------HH: ExpBur :bbbbbbebbeeebebeebe--eebbebbbbbbbbbbbbbeeeebeebbeebbebbebeeee------bbbbbbb----bbbbeeebe-----------eb: queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598 :* * * * ** * * ** * * *** * ** * * * ** : 7n84_F_4 436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521 SecStr :HH----------HHTTS - SS HHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHTT HHHHHHHTTT TTHHHHHHHHHHHH GGGSSS---: ExpBur :be----------ebeeee-ebbebbbbbbbbbbbbbeeebebeeebbeebbeebbebbbbbeebbbbbbbbbbbeeeebbeeebeebbeebbeebee---: Contact : b bb b b b b b b bb bb b b queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692 : * * * * * * * * * * * * * ** * * *: 7n84_F_4 522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616 SecStr :-SSSTTTSTTSS HHHHHHHHHHS SSSHHHHHHHHHTT S SS TTTSHHHHSS STTHHHHHHHHTTHHHHS SS ---- SSSSTH: ExpBur :-eebbeebbebebeeebbeebbbebeeeeeeebebbebbbebeebeebbeebbbbbbeeeeeeeeeebbeebeebbebbeebeeeeeeb----ebebbeb: Contact : bb bbb b queryA 1693:YLDYIRVI:1700 : * : 7n84_F_4 617:FEVYLKLV: 624 SecStr :HHHGGGSS: ExpBur :bbebbebe: |