[pdbjlvh2]Protein Model on 3bg1_F_1_E

Protein Model on 3bg1_F_1_E_1 (TEMPLATE: 3bg1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:3] [assembly_id:6]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	F 1 (F)	polymer(polypeptide(L)) [423 aa]	Nucleoporin NUP145 :NU145_YEAST
2	b		E 1 (E)	polymer(polypeptide(L)) [285 aa]	Protein SEC13 homolog :SEC13_HUMAN	1514S(Q) 1550A(F) 1554G(A) 1557E 1576G(K) 1580K(D) 1584E(R) 1587T(M) 1588R 1619A 1622V(L) 1623R(K) 1626M(Y) (identity: 23.1 %/26.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3bg1_F_1 identity=26.4%

queryA      1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
                :**      *      * ***           *  * **       *  **  *    *  * *   **     * *   **  *        *      *:
3bg1_F_1     153:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 247
SecStr          :HHHHHHHHHHHHHSHHHHHHHHH--T S HHHHHHHHHTTT HHHHHHHHHHTT HHHHHHHH-HHTS  HHHHHHHHHHHHHTTS--S  S  HHHHHH:    
ExpBur          :ebbeebbebbeeebbeebeeebe--ebeeebeebbbebbbeeeeebeeebeebeeeebbebbe-ebeeeeeebeeebeeebeeeee--eeeeeeebbbbb:    

queryA      1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
                :  ** * *   *   *     *   *   *   * *      *           *    *       *            *   *             **:
3bg1_F_1     248:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 324
SecStr          :HHHHHS STTSTT SGGGG--GTS HHHHHHHHHHT   SS  HHHHHHHHHHHS   TT ------HHHHHHH----HHHS TTHH-----------HH:    
ExpBur          :bbbbbbbbbeeeeebeebe--eebebbbbbbbbbbbbbbeeeebeebbebbbeebeeeeee------ebbbbbe----bbbbeeebb-----------eb:    

queryA      1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
                :*           * *  *   **    * *   **       *           * ***   *     **          *     *  *   **     :
3bg1_F_1     325:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 410
SecStr          :HH----------HHHTT -S S HHHHHHHHHHHHTTS S   HHHHHHHHHHHHHHHHHT  HHHHHHHHTT   HHHHHHHHHHHHHHSTGGGST---:    
ExpBur          :be----------ebeeee-eebeebbbbbbbbbbebeeebebeeebbbebbeebbebbbeeebbbbbbbbbbbbbeeebbeeebeebbebbbeebee---:    
Contact         :               b                                   b   b  b                  b   b   b  bb          

queryA      1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
                :          *  *   *  * *     *:
3bg1_F_1     411:-STNDHILNRLKIPSQLIFNAQALKDRYE: 438
SecStr          :-TTTS HHHHTT  HHHHHHHHHHHHHHH:    
ExpBur          :-eeeeebbeebebbeebbeebbeeeeeee:    
Contact         :                    b  bb  b

Protein Model on 3bg1_F_1_E_1 (TEMPLATE: 3bg1 )

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