[pdbjlvh2]Protein Model on 7peq_DA_5_CA

Protein Model on 7peq_DA_5_CA_5 (TEMPLATE: 7peq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	DA 5 (DE)	polymer(polypeptide(L)) [543 aa]	Nuclear pore complex protein Nup96 :NUP98_HUMAN
2	b		CA 5 (DD)	polymer(polypeptide(L)) [678 aa]	Nuclear pore complex protein Nup107 :NU107_HUMAN	1356H 1359A 1360L (identity: 100.0 %/92.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7peq_DA_5 identity=92.0%

queryA      1213:KLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSC:1312
                :****************************************************************************************************:
7peq_DA_5    333:KLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSC: 432
SecStr          :  SHHHHHHHHTTEEEEE SS EEEEEE    STT SGGGSTT SSSSSTTTTSHHHHHHHHHHHHHSS    SS  S  SS SHHHHHHHHHHHHHHHH:    
ExpBur          :eeeeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebbeebeeeeeeeeeeeeebeeeeeebeeebeeeeeeeeeeeeeeeeeeeebeeebbeeeeeebbe:    

queryA      1313:TATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSE:1412
                :****************************************************************************************************:
7peq_DA_5    433:TATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSE: 532
SecStr          :HHHHHHTTHHHHHTTT TTHHHHHHGGGT HHHHHHHHHTTS SHHHHHGGG S  STHHHHHHHHHHHHHSTTTTTT  HHHHHHHHHTTT SSSS ST:    
ExpBur          :eeeeeeeeeeeebeeeeeebebeebeeeebeeebbeebeeeeeeeebeeeeeeeeeeeebeebeeeeeebeeeeeeeeeeebeeeeebeeeebeeeeeee:    
Contact         :                                           b  bb                                                    

queryA      1413:KKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEP:1512
                :*******************************************                               **************************:
7peq_DA_5    533:KKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRDVCFHLLKLYSDRHYDLNQLLEP: 632
SecStr          :T  GGGTTTS HHHHHHHHHSSS TTTS HHHHHHHHHHSS  ------------------------------- SS HHHHHTTSSSGGGS HHHHHHH:    
ExpBur          :beeeeeeeeeeeebeebebeebbeeeeeeeeeeebebeeeeee-------------------------------eeeeeebeeeeeebebeeebeeeeee:    

queryA      1513:RSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVP:1612
                :****************************************************************************************************:
7peq_DA_5    633:RSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVP: 732
SecStr          :HHTT   S HHHHHHHHHHHHTTT S   HHHHHHHHHHHHHHHHHHT SHHHHHHHHS S HHHHHHHHHHHHHH  TTS  TTT  STTTTTGGGT  :    
ExpBur          :eeeeeeeeeebbebbebeebeeeeeeeeeeeeeeebbeebbeebeeeebbebbeebbeeeeeeeebeeeeeebbeeebeebbeeeebebeebebeeebee:    

queryA      1613:AKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCS:1712
                :****************************************************************************************************:
7peq_DA_5    733:AKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCS: 832
SecStr          :  HHHHHHHHHHHHHS HHHHHHHHHTTT  SS HHHHHHHHGGG   TT HHHHHHHHHHHHHHHHHTT  S  HHHHHHHHHHHHHHHHHH SS  S :    
ExpBur          :eeebbebbbebeeeeeebeebbeeebeeebbeeeeeebeebebeeeeeeeebeeeeeebeeeeeebeeeeeeeeeeeeebeeebbeeeeeeeeeeeeeee:    

queryA      1713:GNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELR:1802
                :******************************************                ********************************:
7peq_DA_5    833:GNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLXXXXXXXXXXXXXXXXSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELR: 922
SecStr          : SHHHHHHHHHHHHHTHHHHT     HHHHHHHHHHH  TTT----------------S         TTTSTTTT      HHHHHH  :    
ExpBur          :eeeeeebeebbeeeeebeeeeeeeeeeebeeeeeeebeeeee----------------eeeeeeeeeeeeebeeeeeeeeeeeeeeeeee:

Protein Model on 7peq_DA_5_CA_5 (TEMPLATE: 7peq )

Input Residue Numbers for Focused Sites