Protein Model on 4xmm_B_1_F_1
(TEMPLATE: 
4xmm
)Protein Model on 4xmm_B_1_F_1
(TEMPLATE: 4xmm
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [511 aa] | Nucleoporin NUP145 :NU145_YEAST | |
| 2 | b | F 1 (F) | polymer(polypeptide(L)) [419 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1331V(I) 1344S(V) 1347C(S) 1348S(K) 1351Q(I) 1353S 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1361L 1363S 1365F(Y) 1368S 1371V(I) 1374L 1381D(K) 1382W 1389S(C) 1390F(S) 1391I 1392Q(D) 1395R(I) 1399F(Y) 1438P(D) (identity: 28.6 %/26.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4xmm_B_1 identity=26.4% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
4xmm_B_1 204:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 298
SecStr :HHHHHHHHHHHHHHHHHHHHHHH--H HHHHHHHHHHTT HHHHHHHHHHTT HHHHHHHT-TTTS HHHHHHHHHHHHHHTT--T S HHHHHH:
ExpBur :ebbeebbebbeeebbeebeeebe--ebeeebebbbbbbbbeeeeebbebbeebeeeebbeebe-ebeebeeeebeebbeebeeeee--eeeeeeebbbeb:
Contact : b b bb b bbbbbbbbb b b b bb b bb bbbb b
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
4xmm_B_1 299:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 375
SecStr :HHHHHT SSSSSS GGGGG--GTS HHHHHHHHHHSTTTTTS HHHHHHHHHTT TT ------HHHHHHH----HHHHGGGHH-----------HH:
ExpBur :bbbbbbebbeeeeebeebe--eebebbbbbbbbbbbbebeeeebeebbebbbeebebeeee------eebbbbe----bbbbeeebe-----------eb:
Contact :b b
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
4xmm_B_1 376:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 461
SecStr :HH----------HHHHH - SS HHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHTT HHHHHHHHTT S HHHHHHHHHHHHHHHTTTTSS---:
ExpBur :be----------ebeeeb-eebeebbbbbbbbbbebeeebebeeebbbebbeebbebbbebebbbbbbbbbbbbbeeebbeebbeebbeebbeebee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
: * * * * * *:
4xmm_B_1 462:-STNDHILNRLKIPSQLIFNAQALKDRYE: 489
SecStr :-SHHHHHHHTTT HHHHHHHHHHHHHHH:
ExpBur :-eebbeebbebebbeebbeebeeeeeeee:
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[assembly_id:1]
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