[pdbjlvh2]Protein Model on 3jro_A

Protein Model on 3jro_A_1 (TEMPLATE: 3jro )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(NUP98_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [701 aa]	Fusion Protein of Protein Transport Protein SEC13 and Nucleoporin NUP145 :SEC13_YEAST:NU145_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3jro_A_1 identity=26.4%

queryA      1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
                :**      *      * ***           *  * **       *  **  *    *  * *   **     * *   **  *        *      *:
3jro_A_1     462:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 556
SecStr          :HHHHHHHHHHHHHHHHHHHTTTT--S S TTHHHHHHTTTT HHHHHHHHHHTT  HHHHHGG-G SS  HHHHHHHHHHHHHHHT--TT    HHHHHH:    
ExpBur          :ebbeebbebbeeebbeebeeebe--ebeeebeebbbebbbeeeeebbebbeebeeeebbeebe-ebeebbeebbeebeeebeeeee--eeeeeeebbbbb:    

queryA      1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
                :  ** * *   *   *     *   *   *   * *      *           *    *       *            *   *             **:
3jro_A_1     557:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 633
SecStr          :HHTSSS  SSSTT  GGGG--TTS HHHHHHHHHHTS TTTS HHHHHHHHHTT    TT ------HHHHHHH----HHH STTHH-----------HH:    
ExpBur          :ebbbbbbbbeeeeebeebe--eebebbbbbbbbbbbbbbeeeebeebbeebbeebebeeee------eebbbbe----bbbeeeebb-----------eb:    

queryA      1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
                :*           * *  *   **    * *   **       *           * ***   *     **          *     *  *   **     :
3jro_A_1     634:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVUREITLLRA---: 719
SecStr          :HH----------HHHTT -TTS HHHHHHHHHHTTTTT S   HHHHHHHHHHHHHHHHHTT HHHHHHHHHT S HHHHHHHHHHHHHHS TTSST---:    
ExpBur          :be----------ebbeeb-eebbbbbbbbbbbbbeeeeebebeeebbbebbeebbbbbbbeeebbbbbbbbbbbeebebbeebbebbbbbbbeebee---:    

queryA      1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
                :          *  *   *  * *     *:
3jro_A_1     720:-STNDHILNRLKIPSQLIFNAQALKDRYE: 747
SecStr          :-TTTTTTTTTTT  HHHHHHHHHHHHHHH:    
ExpBur          :-eeeeebbeebebbeebbeebeebbeebe:

Protein Model on 3jro_A_1 (TEMPLATE: 3jro )

Input Residue Numbers for Focused Sites