Protein Model on 4ycz_A_1_C_1 (TEMPLATE: 4ycz )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(NUP98_HUMAN) A 1 (A) polymer(polypeptide(L)) [713 aa] Fusion Protein of Sec13 and Nup145C :G2QES5_THIHA:G2QEZ2_THIHA
2 b C 1 (C) polymer(polypeptide(L)) [195 aa] Nup120 :G2Q2S2_THIHA 1635L 1639K(W) 1656S(P) 1659I(V) 1668K(F) 1669G(R) 1672E(Q) 1673D(L) 1676P(K) 1677P(V) 1694L (identity: 18.2 %/28.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4ycz_A_1 identity=28.1%
queryA      1305:AFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAG:1404
                :** * *   **        * *     *     * * *   **      *  *** * *   *                      * *  *  *  *** :
4ycz_A_1     443:AFWRQLVSEATDR-----ALAQEPXXEEKAIICLAGNRVADACGYLLAAGNFRLATLVSG-IGMXXXXXXXXXXXXX-XXXXXXXFSQPVRA-IYELLAX: 534
SecStr          :HHHHHHHHTTTTT-----TSTT  -- HHHHHHHSSS  HHHHHHHHHSSGGGHHHHHHH-TT ---------------------  HHHHH-HHHHH -:    
ExpBur          :eeebeebeeebee-----eeeebe--eebbebbbebbebeebbeebeeeeeebeeebeee-eee---------------------eeeeeee-eeeeee-:    

queryA      1405:KPVWQLSEKKQINVCSQ----------LDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFH:1494
                :                           *** **    * *    **    *       **     *     * *                          :
4ycz_A_1     535:XXXXXXXXXXXXXXXXXXXXXXXXRFGLDWMRSFGLRLFYTTGATANVAEAV----RSFQADIEQDK---EPEPD--------------------SALWS: 607
SecStr          :------------------------   S  TTHHHHHHHSSSSSS  SHHHH----HHHHHHHHTSS---S S S-------------------- HHHH:    
ExpBur          :------------------------eeeeebeebbbbebeeebeeeeebeebb----bebbeebeeee---eeeee--------------------eebbe:    

queryA      1495:LLKLYSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQ-CEGVLQAS--YAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQ:1591
                :***       *               *    * *     *           *    **  **  *     *  * ****       ** ***  * **  :
4ycz_A_1     608:LLKAFANQEFDWS-------------DXXXGWLLTKAIYATGKXXXGQDAAEKLDKASLAYASALTAQSQWVPATFVLLQLSDAASREAAVRDHLGRHAR: 694
SecStr          :HHHTTSS S  S ------------- ---  HHHHHHHHS  ---  STHHHHHHHHHHHHHHHHSSS SHHHHHHHT  SSHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeeeeeeeeeee-------------e---eebeebbbeeeeb---eeeeeebebbebbebbbeebeeebeeebbbbbeebeeeebbebbbbbbbbbbbb:    

queryA      1592:LLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGL:1691
                :    *           *  **  ** ****           * * *  *                *         *  *   *         ***     :
4ycz_A_1     695:RXXXPRNPNSAFSSLRKFGVPETWIWEAKALDFRARXXSQQEFLALVWAQNYSEANQAFVHRVGPDLVXXXDFRRLFRFAQLLFKVKGKX--QDWDRGAA: 792
SecStr          : ---  SSHHHHHHHHTTT  TTHHHHHHHHHHHH --  THHHHHHTTT  THHHHTTHHHHGGG  ---  HHHHHHHHHHHH    ---   HHHHT:    
ExpBur          :e---eeeeeeebeebbebebeeeebbbbbbbbeebe--eeebbebbeebebbeebbeebeebbeeebe---eeeebeebbeeeeeeeee---eeeeeeee:    
Contact         :                                           b   b                b  b        bb  bb  bb              

queryA      1692:VYLDY:1696
                :*** *:
4ycz_A_1     793:VYLLY: 797
SecStr          :HHHHH:    
ExpBur          :bbeeb:    
Contact         :  b

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