Protein Model on 5f9f_K_1_L_1
(TEMPLATE: 
5f9f
)Protein Model on 5f9f_K_1_L_1
(TEMPLATE: 5f9f
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | K 1 (K) | polymer(polypeptide(L)) [672 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | L 1 (L) | polymer(polyribonucleotide) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 329A 330E 347T 349Q 350I 353N 376N 379K 380Q 381H 382P 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 667T 668N 697T 698S 700A 718V 720N 750K 829C 830H 851K 853F 858K 874G 875I 886V 887I 888K 906S 907K 908W (identity: 100.0 %/98.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9f_K_1 identity=98.5% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:****************************************************************************************************:
5f9f_K_1 12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE GGG SSS HHHHHHT :
ExpBur :eeeebbebbbebbeeeebbbbbbebebeeeebbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeebebebbbeeebeeeebeebbeeb:
Contact : bbb bb bb
queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
:****************************************************************************************************:
5f9f_K_1 112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211
SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SHHHHHHHHHHHHHHTT EEE :
ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe:
Contact : b bb b b bbbb
queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
:**************************************************** ****************************************:
5f9f_K_1 212:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311
SecStr : S HHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHS TT -------- SSHHHHHHHHHHHHHHHT SSHHHHHHHHHHHHHH:
ExpBur :beeeeeebeeebeeeeeeeeebeebeeeebbebbbebbeebbebbeeebeee--------eebeeeebeeebeebbeebbeeeeeeeeebbebbbbbbbb:
Contact : b bb b b
queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
:****************************************************************************************************:
5f9f_K_1 312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411
SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHHSHHHHHHHHT TT HHHHHHHHHHHHHHHH TT EEEE S HHHHH:
ExpBur :bebbeebbbbbebbeebbbebbbeebeebbeebbeeeeeebbbebbeebeeeeeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebbe:
Contact : b bbb
queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
:****************************************************************************************************:
5f9f_K_1 412:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511
SecStr :HHHHHHHT GGGTT EEEE TTSS S HHHHHHHHHT STTSS SEEEES SSS S SEEEEES HHHHHHHGGG STT EEEEE:
ExpBur :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbeeeebbeeebeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebbbb:
Contact : bbb bb bb b b b
queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
:******************************************************* *******************************************:
5f9f_K_1 512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611
SecStr :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHS -- B S EEEEETTT EEEEGGGEEEETTTEEEE SHHHHTS:
ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeeee--eeeeeeebbbbbbbbbbebbebeebbbbeeeebbbbeeebeee:
Contact : b bb
queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
:**********************************************************************************:
5f9f_K_1 612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 693
SecStr :EEEEE SS TT EEEEEEE STTT EEEEEEEETTEEEEEE GGGEEEEESSS EEE SSGGG B EE TT :
ExpBur :beebebeeeeeeeebbbebbbebeeeebebebbbbbbbeeeebbbbebebbbbbbeeebebeeeeebeebebbeeebeeeee:
Contact : b b b bb bbb bbb
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[assembly_id:1]
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