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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | K 1 (K) | polymer(polypeptide(L)) [644 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | BA 1 (K) | non-polymer(ZN) | ZINC ION | 810C 813C 864C 869C 873W (identity: 100.0 %/94.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f98_K_1 identity=94.4% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 :****************************************************************************************************: 5f98_K_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHTTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTTSTTS HHHHHHT: ExpBur :eeeeebbebbbebbbeeebbbbbbebebeeeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeeeeeeebeeebee: queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 :****************************************************************************************************: 5f98_K_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210 SecStr : SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SHHHHHHHHHHHHHHTT EEE: ExpBur :bebbbbbbebbbebbeeeebebbeebebbbbbbbbbbeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbbbbbbbbb: queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 :***************************************************** ****************************************: 5f98_K_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310 SecStr : TTHHHHHHHS EEEEEE HHHHHHHHHHHHHHHHHHHSS ------- TTSHHHHHHHHHHHHHSSS TTSHHHHHHHHHHHH: ExpBur :bbeeeeeebeeebeebeeeeeebeeeeeeebeebbeebbbbbeebeeeeeeee-------eeeeeeeebeeebeebeeebbeeeeeeeeebeebbbebbe: queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 :*********************************** ************************************************************: 5f98_K_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRXXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410 SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHTT ----- HHHHHHHHHHHHHHHHHHHSS SS HHHHHHHHHHHHHHHH TT EEEE SSHHHH: ExpBur :bbbbbeebbbbbebbeebbbebbbeebeeebeeee-----ebbeebebebeeebeebeebbeeeeeebebbebbbebbeebbeeeeebebbbbbeeeebb: queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740 :************************ ***************************************************: 5f98_K_1 411:DALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510 SecStr :HHHHHHHHT SS S EEEE ------------------------- SEEEES SSS S SEEEEES HHHHHHHGGGG STT EEEE: ExpBur :ebbeebbeebeebeebbbbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbbbbbbeeeebebbb: queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 :********************************************************* ******************************************: 5f98_K_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610 SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHTT - S EEEE SSS EEEETTTEEEETTTEEEE SHHHHT: ExpBur :bbeeeebbebbeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeeeeee-eeeeeeebbbbbbbbbeebbebeebebbeeeebbbeeeebee: Contact : b b queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :**********************************************************************************: 5f98_K_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :SEE B SS TT EEEEEEE STTT EEEEEEEETTEEEEEE GGG EEEETTT EE SSTTTS S B S : ExpBur :ebeebebeeeeeeeebeebbbbebebeebeeebbbbbbbeeeebbbbebebbbbbeeeeeebeeeeebeebebeeeeeeeee: Contact : b b b |