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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | K 1 (K) | polymer(polypeptide(L)) [637 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [646 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | 286P 288G 289Q (identity: 100.0 %/93.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f9h_K_1 identity=93.5% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341 :****************************************************************************************************: 5f9h_K_1 12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTTSTTS HHHHHHT : ExpBur :eeeebbebbbeebeeeebbbbbbebebebeebbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeebebebbbeeebeeeebeeebeeb: Contact : b bb queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441 :****************************************************************************************************: 5f9h_K_1 112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211 SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE : ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe: queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541 :************************** ********************* ****************************************: 5f9h_K_1 212:VKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRIXXXXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311 SecStr : TTHHHHTTTS EEEEEE - HHHHHHHHHHHHHHHHHHT ------------ SSSHHHHHHHHHHHHHHHH SSHHHHHHHHHHHHHH: ExpBur :beeeeeebeeebeebeeeeeebebbe-eebbebbbebbeebeebeeee------------eeeeeeebeeebeeebeebbeeeeeeeeebbebbbbbbbb: queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641 :************************************ **************************************************************: 5f9h_K_1 312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXXDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411 SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHH -- TTHHHHHHHHHHTHHHHHHHHH STT HHHHHHHHHHHHHHHH TT EEEE SSHHHHH: ExpBur :bebbeebbbbbebbebbbbebbbeebeebbeebeee--eeebeebbeebeeebeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe: queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741 :********************** ****************************************************: 5f9h_K_1 412:ALKNWIEGNPKLSFLKPGILTGXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511 SecStr :HHHHHHHT GGGTT EEE -------------------------- SEEEES SSS S S SEEEEES HHHHHHHGGGG STT EEEEE: ExpBur :bbeebbeebeebeebbbbeeee--------------------------eeebebbbeeebbeeeeeebebbbbbbbebebbebbbbbbbbbeeebebbbb: queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841 :***************************************************** ********************************************: 5f9h_K_1 512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611 SecStr :ES HHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHT --- B S EEEEETTT EEEETTSEEEETTTEEEE SHHHHTT: ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee---eeeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebeee: queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :*********************************************************************************: 5f9h_K_1 612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :EEEEE SS EETTEEEEEEEEE STTT EEEEEEEETTEEEEEE GGGEEEEETTT EEE SSGGG B EE TT : ExpBur :beebebeeeeeeeebebebbbebeeeebebebbbbbbbeeeebbbbebebbbbbbeeeeebeeeeebeebebbeeebeeee: |