[pdbjlvh2]Protein Model on 5f98_K_1_A

Protein Model on 5f98_K_1_A_1 (TEMPLATE: 5f98 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	K 1 (K)	polymer(polypeptide(L)) [644 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		A 1 (A)	polymer(polypeptide(L)) [650 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN	286P 288G 289Q (identity: 100.0 %/94.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f98_K_1 identity=94.4%

queryA       241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
                :****************************************************************************************************:
5f98_K_1      11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr          :    HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHTTS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE TTTSTTS HHHHHHT:    
ExpBur          :eeeeebbebbbebbbeeebbbbbbebebeeeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeeeeeeebeeebee:    
Contact         :                                             b bb                                                   

queryA       341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
                :****************************************************************************************************:
5f98_K_1     111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr          : SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS      EEEEEES    TT  SHHHHHHHHHHHHHHTT  EEE:    
ExpBur          :bebbbbbbebbbebbeeeebebbeebebbbbbbbbbbeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbbbbbbbbb:    

queryA       441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
                :*****************************************************       ****************************************:
5f98_K_1     211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr          :   TTHHHHHHHS   EEEEEE       HHHHHHHHHHHHHHHHHHHSS   -------   TTSHHHHHHHHHHHHHSSS   TTSHHHHHHHHHHHH:    
ExpBur          :bbeeeeeebeeebeebeeeeeebeeeeeeebeebbeebbbbbeebeeeeeeee-------eeeeeeeebeeebeebeeebbeeeeeeeeebeebbbebbe:    

queryA       541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
                :***********************************     ************************************************************:
5f98_K_1     311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRXXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr          :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHTT  ----- HHHHHHHHHHHHHHHHHHHSS SS   HHHHHHHHHHHHHHHH TT  EEEE SSHHHH:    
ExpBur          :bbbbbeebbbbbebbeebbbebbbeebeeebeeee-----ebbeebebebeeebeebeebbeeeeeebebbebbbebbeebbeeeeebebbbbbeeeebb:    

queryA       641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
                :************************                         ***************************************************:
5f98_K_1     411:DALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr          :HHHHHHHHT SS  S  EEEE   -------------------------  SEEEES  SSS S     SEEEEES    HHHHHHHGGGG STT EEEE:    
ExpBur          :ebbeebbeebeebeebbbbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbbbbbbeeeebebbb:    

queryA       741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
                :********************************************************* ******************************************:
5f98_K_1     511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr          :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHTT   -     S EEEE SSS  EEEETTTEEEETTTEEEE SHHHHT:    
ExpBur          :bbeeeebbebbeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeeeeee-eeeeeeebbbbbbbbbeebbebeebebbeeeebbbeeeebee:    

queryA       841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :**********************************************************************************:
5f98_K_1     611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :SEE  B SS    TT  EEEEEEE STTT  EEEEEEEETTEEEEEE GGG EEEETTT  EE  SSTTTS S   B  S  :    
ExpBur          :ebeebebeeeeeeeebeebbbbebebeebeeebbbbbbbeeeebbbbebebbbbbeeeeeebeeeeebeebebeeeeeeeee:

Protein Model on 5f98_K_1_A_1 (TEMPLATE: 5f98 )

Input Residue Numbers for Focused Sites