[pdbjlvh2]Protein Model on 6kyv_J

Protein Model on 6kyv_J_1 (TEMPLATE: 6kyv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:5]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	J 1 (J)	polymer(polypeptide(L)) [672 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6kyv_J_1 identity=99.3%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
6kyv_J_1       4:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 103
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHTS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE SSTTTTS HHHHHHT :    
ExpBur          :eeeebbebbbebbbeeebbbbbbebebebeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeeeebbbeeebeeeebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
6kyv_J_1     104:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 203
SecStr          :SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG  SS HHHHHHHHHHHHHHSS  S   EEEEEES    TT  SHHHHHHHHHHHHHHTT SEEE :    
ExpBur          :ebbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbebbb:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :****************************************************************************************************:
6kyv_J_1     204:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 303
SecStr          :  S HHHHHTTS   EEEEEE    S  HHHHHHHHHHHHHHHHHHTTSSSGGGSSS  S  TTSHHHHHHHHHHHHHHTS   SSSSSHHHHHHHHHHH:    
ExpBur          :beeeeeebeeebeebebeeeebeebeebebeebbbebbeebbebbeeebeebeeebeeeeeebeeeebbebbeebbeebbeeebeeeeebbebbbbbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :***********************************   **************************************************************:
6kyv_J_1     304:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXXDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 403
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHTTT  --- HHHHHHHHHHHHHHHHHHHHHS TTS  HHHHHHHHHHHHHHHH TT  EEEE SSHHHHH:    
ExpBur          :bebbeebbbbbebbeebbbebbbeebeebbeeeee---eeebeebeeebeeeeeebeebbeeeeeebebbebbbebbeebbeeeeebbbbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :****************************************************************************************************:
6kyv_J_1     404:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 503
SecStr          :HHHHHHHH GGGTT  EEEE     TTSS S  HHHHHHHHHTBSTTSSBSEEEE    SS S     SEEEEES    HHHHHHGGGG  STT EEEEE:    
ExpBur          :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebeeebebbeeebeebbbbbbeeebeeeebeebebbbbbbbeeebbbbbbbbbbbeeeebebbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :*****************************************************  *********************************************:
6kyv_J_1     504:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 603
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHTT --       S EEEEETTT  EEEEGGGEEEETTTEEEE STTHHHH:    
ExpBur          :beeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeeeebebbbbbbbbebbebeebebbeeeebbbeeeebeee:    

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
                :*****************************************************************************:
6kyv_J_1     604:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 680
SecStr          :EEEEE S   EETTEEEEEEEEE TTS   EEEEEEE SS EEEEE GGGEEEEETTT  EEE SSTTSS S   B :    
ExpBur          :beeeebeeeeeeeebebebbbbbeeeebebebbbbbbeeeeebbbbebebbbbbeeeebebeeeeebeebebeeeee:

Protein Model on 6kyv_J_1 (TEMPLATE: 6kyv )

Input Residue Numbers for Focused Sites