[pdbjlvh2]Protein Model on 5f9h_I

Protein Model on 5f9h_I_1 (TEMPLATE: 5f9h )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	I 1 (I)	polymer(polypeptide(L)) [644 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f9h_I_1 identity=94.2%

queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f9h_I_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHSS SS    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE TTT TTS HHHHHH:    
ExpBur          :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeeeeeeeebbbbbbbbeeebbeebeeebeeebeeeebebebbbeeebeeeebeeebe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :**********************************************************  ****************************************:
5f9h_I_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGXXGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :T SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHT  --    EEEEEES    TT SSHHHHHHHHHHHHHHTT SEE:    
ExpBur          :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeebbbebbbebbeeeeee--eeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :**************************** ************************          *************************************:
5f9h_I_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXXEFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E   TTHHHHHTTS   EEEEEE     -  HHHHHHHHHHHHHHHHHHHS  ----------  SSSHHHHHHHHHHHHGGG   S  HHHHHHHHHHH:    
ExpBur          :bebeeeeeebeeebeebebeeeebeebe-ebbeebbbebbeebbeeeeeeeee----------ebeeeebeeebeeebeebbebeeeeeeebeeebbebb:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :************************************** *************************************************************:
5f9h_I_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHH -  HHHHHHHHHHHHTHHHHHHHHH SSS  HHHHHHHHHHHHHHHH TT  EEEE S HHH:    
ExpBur          :bbbebbebbbbbbebbebbbbebbbeebeebbeebeee-eeeebeebeebbeeebeebeeebeeeebebebbeebbebbeebbeeeeebebbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :**************************                       ***************************************************:
5f9h_I_1     410:VDALKNWIEGNPKLSFLKPGILTGRGXXXXXXXXXXXXXXXXXXXXXXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHT GGGTT  EEEE    -----------------------   SEEEES  SSS S  S  SEEEEES    HHHHHHHGGGG STT EEE:    
ExpBur          :bebbbebbeebeebeebebbeeeeee-----------------------eeebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebb:    

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :*******************************************************   ******************************************:
5f9h_I_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH ---    B S EEEEETTT  EEEETTSEEEETTTEEEE STTGG:    
ExpBur          :bbbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee---eeeeeeeebbbbbbbbbeebbebeebbbbeeeebbbbeeebe:    

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
                :************************************************************************************:
5f9h_I_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 693
SecStr          :GTEEEEE SS  EETTEEEEEEEEE GGG   EEEEEEEETTEEEEEE GGGEEEEETTT  EEE SSGGG  B   B  TT  :    
ExpBur          :eebeeeebeeeeeeeebeeebbbbbebeebebebbbebebeeeebbbbebebbbbbbeeebebeeeeebeebebeeeebeeeee:

Protein Model on 5f9h_I_1 (TEMPLATE: 5f9h )

Input Residue Numbers for Focused Sites