[pdbjlvh2]Protein Model on 5f98_I

Protein Model on 5f98_I_1 (TEMPLATE: 5f98 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	I 1 (I)	polymer(polypeptide(L)) [647 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f98_I_1 identity=94.7%

queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f98_I_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHTTS SS    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE TTS SSS HHHHHH:    
ExpBur          :eeeeeebbebbbeebeeeebbbbbbebebebebbbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebebbbe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
5f98_I_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :H SEEEE HHHHHHHHHTSSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHSSS      EEEEEES    TT  SHHHHHHHHHHHHHHTT SEE:    
ExpBur          :ebebbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebebeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbebebbeb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :********************************************************     ***************************************:
5f98_I_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENXXXXXNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E   TTHHHHHTTS   EE  EE       HHHHHHHHHHHHHHHHHHTT SS   -----   TTSSHHHHHHHHHHHHHTT   TT TTHHHHHHHHH:    
ExpBur          :bbbeeeeeebeeebeebeeeeeebeebeeeebbebbbebbbebbebbeeebeeeee-----eeeeeeeebeeebeeeeeebbeeeeeeeeebeeebbbbb:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
5f98_I_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHTTS   TTHHHHHHHHTTTHHHHHHHHH SS   HHHHHHHHHHHHHHHH TT  EEEE SSSHH:    
ExpBur          :bbbebbebbbebbebbeebbbebbbeebbeebeeebeeeeeebbeebbeebeeeeeebeebbeeeebebebbeebbebbeeebeeeeebebbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :***********************                           **************************************************:
5f98_I_1     410:VDALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHT STTTT    EE ---------------------------  SEEEES  SSS S  S  SEEEEET    HHHHHHHGGGG STT EEE:    
ExpBur          :bebbbebbeebeebeebebbeee---------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbbbbbbbeeebbbb:    

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :*******************************************************    *****************************************:
5f98_I_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH ----       EEEEETTT    EETTTEEEETTTEEEE SHHHH:    
ExpBur          :bbbbeeebeebbeebbeebebbeebbeebeeeeeeebeebbeebbeeebeeeeee----eeeeeeebbbbbbbbbeebbebeebebbeeeebbbeeeebe:    

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***********************************************************************************:
5f98_I_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :TTEEEEE SS    TT  EEEEEEE STT   EEEEEE BTTB  EEE GGGEEEEETTT  EE  SSTTT  S   B  TT :    
ExpBur          :eebeebebeeeeeeeebebebbbebebeebebebbbebbeeeeebbbbebbbbbbebeeebebeeeeebeebebeeeebeeee:

Protein Model on 5f98_I_1 (TEMPLATE: 5f98 )

Input Residue Numbers for Focused Sites