Protein Model on 5f9f_I_1_JA_1 (TEMPLATE: 5f9f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) I 1 (I) polymer(polypeptide(L)) [674 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b JA 1 (I) non-polymer(MG) MAGNESIUM ION 723K (identity: 100.0 %/98.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5f9f_I_1 identity=98.7%
queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f9f_I_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHHHHHHT  EEEE  TTS HHHHHHHHHHHHHHHS SS    EEEE SSHHHHHHHHHHHHHHTTTTT  EEEE GGG SSS HHHHHH:    
ExpBur          :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeebeeeeebbbbbbbebeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
5f9f_I_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :T SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS      EEEEEES    TT  SHHHHHHHHHHHHHHTT SEE:    
ExpBur          :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :*******************************************************       **************************************:
5f9f_I_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E   TTHHHHHTTS   EEEEEE    S  HHHHHHHHHHHHHHHHHHTTS    -------  TTSHHHHHHHHHHHHHGGG   SSHHHHHHHHHHHH:    
ExpBur          :bbbeeeeebbeeebeebebeeeebeebeeeebeebbbebbeebbebbeeebeeee-------eebbeeebeeebeeebeebbeeeeeeeeebbebbbbbb:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
5f9f_I_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHT   HHHHHHHHHHHHHHHHHHHHSS SSS  HHHHHHHHHHHHHHHH TT  EEEE S HHH:    
ExpBur          :bbbebbeebbbbbebbeebbbebbbeebeebbeebeeeeeeebbeebbbebeeebeebeeebeeeebebebbebbbebbeebbeeeeebbbbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :****************************************************************************************************:
5f9f_I_1     410:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHH GGGTT  EEEE     TTSS S  HHHHHHHHHT STTSS SEEEE   SSS S  S  SEEEEES    HHHHHHHGGGG STT EEE:    
ExpBur          :bebbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbebeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbebebbebbbbbbbbbeeebebb:    
Contact         :                                                                                   b                

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :********************************************************  ******************************************:
5f9f_I_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXXKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH  --    B S EEEEETTT  EEEETTTEEEETTTEEEE STTGG:    
ExpBur          :bbbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeee--eeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebe:    

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***********************************************************************************:
5f9f_I_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :GSEEEEE SS    TT  EEEEEEE STT   EEEEEEEETTEEEEEE GGGEEEEETTT  EE  SSTTT  B   B  TT :    
ExpBur          :eebeeeebebeeeeebbebebbbbbeeeebebbbbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123