Protein Model on 5f9h_I_1_J_1
(TEMPLATE: 
5f9h
)Protein Model on 5f9h_I_1_J_1
(TEMPLATE: 5f9h
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | I 1 (I) | polymer(polypeptide(L)) [644 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | J 1 (J) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 546R 635K 636T 637R 662T 663G 664R 697T 698S 700A 718V 720N 750K 830H 853F 854S 888K 906S 908W (identity: 100.0 %/94.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9h_I_1 identity=94.2% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
:****************************************************************************************************:
5f9h_I_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHSS SS EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTT TTS HHHHHH:
ExpBur :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeeeeeeeebbbbbbbbeeebbeebeeebeeebeeeebebebbbeeebeeeebeeebe:
Contact : bbb bb
queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
:********************************************************** ****************************************:
5f9h_I_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGXXGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr :T SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHT -- EEEEEES TT SSHHHHHHHHHHHHHHTT SEE:
ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeebbbebbbebbeeeeee--eeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbb:
Contact : b bb b bbbb
queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
:**************************** ************************ *************************************:
5f9h_I_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXXEFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr :E TTHHHHHTTS EEEEEE - HHHHHHHHHHHHHHHHHHHS ---------- SSSHHHHHHHHHHHHGGG S HHHHHHHHHHH:
ExpBur :bebeeeeeebeeebeebebeeeebeebe-ebbeebbbebbeebbeeeeeeeee----------ebeeeebeeebeeebeebbebeeeeeeebeeebbebb:
Contact : b bb b
queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
:************************************** *************************************************************:
5f9h_I_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHH - HHHHHHHHHHHHTHHHHHHHHH SSS HHHHHHHHHHHHHHHH TT EEEE S HHH:
ExpBur :bbbebbebbbbbbebbebbbbebbbeebeebbeebeee-eeeebeebeebbeeebeebeeebeeeebebebbeebbebbeebbeeeeebebbbbbeeeeb:
Contact : b bbb
queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
:************************** ***************************************************:
5f9h_I_1 410:VDALKNWIEGNPKLSFLKPGILTGRGXXXXXXXXXXXXXXXXXXXXXXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr :HHHHHHHHHT GGGTT EEEE ----------------------- SEEEES SSS S S SEEEEES HHHHHHHGGGG STT EEE:
ExpBur :bebbbebbeebeebeebebbeeeeee-----------------------eeebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebb:
Contact : bbb bb b b b
queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
:******************************************************* ******************************************:
5f9h_I_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH --- B S EEEEETTT EEEETTSEEEETTTEEEE STTGG:
ExpBur :bbbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee---eeeeeeeebbbbbbbbbeebbebeebbbbeeeebbbbeeebe:
Contact : b b
queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
:************************************************************************************:
5f9h_I_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 693
SecStr :GTEEEEE SS EETTEEEEEEEEE GGG EEEEEEEETTEEEEEE GGGEEEEETTT EEE SSGGG B B TT :
ExpBur :eebeeeebeeeeeeeebeeebbbbbebeebebebbbebebeeeebbbbebebbbbbbeeebebeeeeebeebebeeeebeeeee:
Contact : bb b b b
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[assembly_id:1]
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