Protein Model on 5f9f_I_1_J_1
(TEMPLATE: 
5f9f
)Protein Model on 5f9f_I_1_J_1
(TEMPLATE: 5f9f
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DOWNLOAD: [sequence-replaced 3D model]
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | I 1 (I) | polymer(polypeptide(L)) [674 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | J 1 (J) | polymer(polyribonucleotide) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 667T 668N 678Q 697T 698S 700A 718V 720N 750K 829C 830H 853F 858K 875I 886V 888K 906S 908W 909K (identity: 100.0 %/98.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9f_I_1 identity=98.7% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
:****************************************************************************************************:
5f9f_I_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr : HHHHHHHHHHHHT EEEE TTS HHHHHHHHHHHHHHHS SS EEEE SSHHHHHHHHHHHHHHTTTTT EEEE GGG SSS HHHHHH:
ExpBur :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeebeeeeebbbbbbbebeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebe:
Contact : bbb bb
queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
:****************************************************************************************************:
5f9f_I_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr :T SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SHHHHHHHHHHHHHHTT SEE:
ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbb:
Contact : b bb b bbb
queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
:******************************************************* **************************************:
5f9f_I_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr :E TTHHHHHTTS EEEEEE S HHHHHHHHHHHHHHHHHHTTS ------- TTSHHHHHHHHHHHHHGGG SSHHHHHHHHHHHH:
ExpBur :bbbeeeeebbeeebeebebeeeebeebeeeebeebbbebbeebbebbeeebeeee-------eebbeeebeeebeeebeebbeeeeeeeeebbebbbbbb:
Contact : b bb b b
queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
:****************************************************************************************************:
5f9f_I_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHSS SSS HHHHHHHHHHHHHHHH TT EEEE S HHH:
ExpBur :bbbebbeebbbbbebbeebbbebbbeebeebbeebeeeeeeebbeebbbebeeebeebeeebeeeebebebbebbbebbeebbeeeeebbbbbbbeeeeb:
Contact : b bbb
queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
:****************************************************************************************************:
5f9f_I_1 410:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr :HHHHHHHHHH GGGTT EEEE TTSS S HHHHHHHHHT STTSS SEEEE SSS S S SEEEEES HHHHHHHGGGG STT EEE:
ExpBur :bebbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbebeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbebebbebbbbbbbbbeeebebb:
Contact : bbb bb b bb b b b
queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
:******************************************************** ******************************************:
5f9f_I_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXXKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH -- B S EEEEETTT EEEETTTEEEETTTEEEE STTGG:
ExpBur :bbbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeee--eeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebe:
Contact : b bb
queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:***********************************************************************************:
5f9f_I_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :GSEEEEE SS TT EEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EE SSTTT B B TT :
ExpBur :eebeeeebebeeeeebbebebbbbbeeeebebbbbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:
Contact : b b b b b b bb
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[assembly_id:1]
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