[pdbjlvh2]Protein Model on 6kyv_H

Protein Model on 6kyv_H_1 (TEMPLATE: 6kyv )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	H 1 (H)	polymer(polypeptide(L)) [672 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6kyv_H_1 identity=99.3%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
6kyv_H_1       4:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 103
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHTSS TT    EEEE SSHHHHHHHHHHHHHHHGGGT  EEEE TTT TTS HHHHHHT :    
ExpBur          :eeeebbebbbebbeeeebbbbbbebebebeebbbbbbeebbeeeeeeeebbbbbbbbeeebbeebeeebeebbeeeebebebbbeeebeeeebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
6kyv_H_1     104:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 203
SecStr          :SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG  SS HHHHHHHHHHHHHHSS      EEEEEES    SS  SHHHHHHHHHHHHHHTT  EEE :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbb:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :****************************************************************************************************:
6kyv_H_1     204:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 303
SecStr          : SS HHHHHHH    EEEEEE    S  HHHHHHHHHHHHHHHHHHTT TTGGGSSS  S  TTSHHHHHHHHHHHHHGGG   TTSSHHHHHHHHHHHH:    
ExpBur          :beeeeebbeeebeebebeeeebeebeeeebeebbbebbeebbebbeeebeebeeebebeebebeeeebeebbeebeeebbeeeeeeeeebbebbbbbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :***********************************   **************************************************************:
6kyv_H_1     304:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXXDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 403
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH  --- HHHHHHHHHHHHTHHHHHHHHH TT   HHHHHHHHHHHHHHHH TT  EEEE SSHHHHH:    
ExpBur          :bebbeebbbbbebbeebebebbbeebeebbeebee---eeebeebbeebeeeeeebeebbeeeebebebbeebbebbeebbeeeeebbbbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :****************************************************************************************************:
6kyv_H_1     404:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 503
SecStr          :HHHHHHHT GGGTT  EEEE     TTSS S  HHHHHHHHHTBSSSSSBSEEEE    SS S     SEEEEES    HHHHHHGGGG  STT EEEEE:    
ExpBur          :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebeeebeebeeebeebbbbbbeeeeeeeebeebebbbbbbbebebbebbbbbbbbeeeebebbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :*****************************************************  *********************************************:
6kyv_H_1     504:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 603
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHT  --       S EEEEETTT  EEEETTTEEEETTTEEEE SSSGGGS:    
ExpBur          :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeeeebebbbbbbbbebbebeebebbeeeebbbeeeebeee:    

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
                :*****************************************************************************:
6kyv_H_1     604:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 680
SecStr          :EEEEE SS  EETTEEEEEEEEE GGG   EEEEEEE SS EEEEE GGGEEEEETTT  EEE SSGGGS S  EE :    
ExpBur          :beeeebebeeeeeebebebbbbbeeeebebebbbebebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeee:

Protein Model on 6kyv_H_1 (TEMPLATE: 6kyv )

Input Residue Numbers for Focused Sites