Protein Model on 5f98_G_1_W_1 (TEMPLATE: 5f98 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) G 1 (G) polymer(polypeptide(L)) [647 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b W 1 (G) non-polymer(MG) MAGNESIUM ION 827E 830H 854S (identity: 100.0 %/94.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5f98_G_1 identity=94.7%
queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f98_G_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHH  TT    EEEE SSHHHHHHHHHHHHHHHGGGT  EEEE STT SSS HHHHHH:    
ExpBur          :eeeebebbebbbebbeeeebbbbbbebebeeeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebbeebeeeeeebbbbbeeebeeeebeeebe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
5f98_G_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :T SEEEE HHHHHHHHHHTSS  GGG SEEEETTGGG STT HHHHHHHHHHHHHSSSS     EEEEEES    TT SSHHHHHHHHHHHHHHTT  EE:    
ExpBur          :ebebbbbbbebbbebbeeeebebbebbbbbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbbbbbbeb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :******************************************************        **************************************:
5f98_G_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E   TTHHHHHHHS   EEEEEE    S  HHHHHHHHHHHHHHHHHHTTS   --------  TTSHHHHHHHHHHHHHHTT   SSSSHHHHHHHHHH:    
ExpBur          :bbbeeeeeebeeebeebebeeeebeebeeebbbebbbebbeebeebbeeeeeee--------eeeeeeebeeebeebbeebbeeeeeeeeebbebbbbbb:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
5f98_G_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS   HHHHHHHHHHHHHHHHHHHHHT TTS  HHHHHHHHHHHHHHHH TT  EEEE SSHHH:    
ExpBur          :bbbebbeebbbbbebbeebebbbbbeebbebbeeeeeeeeeeebeebbeebeeeeeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :*************************                         **************************************************:
5f98_G_1     410:VDALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHT STTTT  EEEE   -------------------------  SEEEES  SSS S     SEEEEES    HHHHHHHGGGG STT EEE:    
ExpBur          :bebbeebbeebeebeebbbbeeeee-------------------------eeebebbbebebbeeeeeebebbbbbbbeeebbbbbbbbbbbbeeebebb:    

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :********************************************************   *****************************************:
5f98_G_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHTT ---       EEEEETTT  EEEETTTEEEETTTEEEE STTGG:    
ExpBur          :bbbeeeebbebbeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeee---eeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebe:    
Contact         :                                                                                       b  b         

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***********************************************************************************:
5f98_G_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :GSEEEEE SS    TTEEEEEEEEE SSS   EEEEEEEETTEEEEEE GGGEEEEETTT  EEE SSTTTS S  EE  TT :    
ExpBur          :eebeeeebeeeeeeeebbeebbbebeeeebebebbbbbbeeeeebbbbebebbbbbeeeebebeeeeebeebebeeeebeeee:    
Contact         :              b

Input Residue Numbers for Focused Sites

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