CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [647 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | V 1 (G) | non-polymer(ZN) | ZINC ION | 810C 813C 864C 869C (identity: 100.0 %/94.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f98_G_1 identity=94.7% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339 :****************************************************************************************************: 5f98_G_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHH TT EEEE SSHHHHHHHHHHHHHHHGGGT EEEE STT SSS HHHHHH: ExpBur :eeeebebbebbbebbeeeebbbbbbebebeeeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebbeebeeeeeebbbbbeeebeeeebeeebe: queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439 :****************************************************************************************************: 5f98_G_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209 SecStr :T SEEEE HHHHHHHHHHTSS GGG SEEEETTGGG STT HHHHHHHHHHHHHSSSS EEEEEES TT SSHHHHHHHHHHHHHHTT EE: ExpBur :ebebbbbbbebbbebbeeeebebbebbbbbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbbbbbbeb: queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539 :****************************************************** **************************************: 5f98_G_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309 SecStr :E TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHTTS -------- TTSHHHHHHHHHHHHHHTT SSSSHHHHHHHHHH: ExpBur :bbbeeeeeebeeebeebebeeeebeebeeebbbebbbebbeebeebbeeeeeee--------eeeeeeebeeebeebbeebbeeeeeeeeebbebbbbbb: queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639 :****************************************************************************************************: 5f98_G_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409 SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHT TTS HHHHHHHHHHHHHHHH TT EEEE SSHHH: ExpBur :bbbebbeebbbbbebbeebebbbbbeebbebbeeeeeeeeeeebeebbeebeeeeeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeeb: queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739 :************************* **************************************************: 5f98_G_1 410:VDALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509 SecStr :HHHHHHHHHT STTTT EEEE ------------------------- SEEEES SSS S SEEEEES HHHHHHHGGGG STT EEE: ExpBur :bebbeebbeebeebeebbbbeeeee-------------------------eeebebbbebebbeeeeeebebbbbbbbeeebbbbbbbbbbbbeeebebb: queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839 :******************************************************** *****************************************: 5f98_G_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609 SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHTT --- EEEEETTT EEEETTTEEEETTTEEEE STTGG: ExpBur :bbbeeeebbebbeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeee---eeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebe: Contact : b b queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :***********************************************************************************: 5f98_G_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :GSEEEEE SS TTEEEEEEEEE SSS EEEEEEEETTEEEEEE GGGEEEEETTT EEE SSTTTS S EE TT : ExpBur :eebeeeebeeeeeeeebbeebbbebeeeebebebbbbbbeeeeebbbbebebbbbbeeeebebeeeeebeebebeeeebeeee: Contact : b b |