Protein Model on 6kyv_F_1_E_1
(TEMPLATE: 
6kyv
)Protein Model on 6kyv_F_1_E_1
(TEMPLATE: 6kyv
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | F 1 (F) | polymer(polypeptide(L)) [672 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | E 1 (E) | polymer(polyribonucleotide) | RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*GP*CP*GP*UP*UP*UP*GP*CP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 498Q 499I 500Q 507Q 510E 514V 518K 546R 635K 636T 637R 662T 663G 664R 667T 668N 678Q 697T 698S 720N 750K 829C 830H 853F 858K 874G 875I 886V 887I 888K 906S 907K 908W (identity: 100.0 %/99.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6kyv_F_1 identity=99.3% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:****************************************************************************************************:
6kyv_F_1 4:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 103
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHSS SS EEEE SSHHHHHHHHHHHHHHHTTTT EEEE SSS SSS HHHHHHH :
ExpBur :eeeebbebbbebbeeeebbbbbbebebebeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeebebebbbeeebeeeebeeebeeb:
Contact : bbb bb
queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
:****************************************************************************************************:
6kyv_F_1 104:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 203
SecStr :SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG SSS HHHHHHHHHHHHHHSS S EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE :
ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbb:
Contact : b bb b bbbb
queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
:****************************************************************************************************:
6kyv_F_1 204:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 303
SecStr : TTHHHHHTTS EEEEEE S HHHHHHHHHHHHHHHHHHTTS GGGTSS S TTSHHHHHHHHHHHHHHTT TTSSHHHHHHHHHHHH:
ExpBur :beeeeeebeeebeebebeeeebeebeeeebeebbbebbeebbebbeeebeebeeebebeeeebeeeebbebbeebbeebbeeeeeeeeebbebbbbbbbb:
Contact : bbb b b b b
queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
:*********************************** **************************************************************:
6kyv_F_1 304:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXXDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 403
SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH --- HHHHHHHHHHHHHHHHHHHHHH TT HHHHHHHHHHHHHHHH TT EEEE SSHHHHH:
ExpBur :bebbeebbbbbebbbebbbebbbeebeebbeeeee---eeebeebbeebeeeeeebeebeeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebbe:
Contact : b bbb
queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
:****************************************************************************************************:
6kyv_F_1 404:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 503
SecStr :HHHHHHHT GGGTT EEEE TTSS S HHHHHHHHTTSSSSSS SEEEE SS S SEEEEES HHHHHHGGGG STT EEEEE:
ExpBur :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebeebbebbeeeeeebbbbbbeeebeeeebeebebbbbbbbeeebbebbbbbbbbbeeebebbbb:
Contact : bbb bb b bb b
queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
:***************************************************** *********************************************:
6kyv_F_1 504:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 603
SecStr :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHT -- EEEEETTT EEEEGGGEEEETTTEEEE SSSGGGT:
ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeebebebbbbbbbbebbebeebebbeeeebbbeeeebeee:
Contact : b bb
queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
:*****************************************************************************:
6kyv_F_1 604:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 680
SecStr :EEEEE SS EETTEEEEEEEEE GGG EEEEEE SS EEE GGGEEEEETTT EE SSSTT S EE :
ExpBur :beeeebebeeeeeebebebbbbbeeeebebbbbbbbbeeeeebbbbebebbbbbeeeebebeeeeebeebebeeeee:
Contact : b b bb bbb bbb
|
[assembly_id:3]
[help]