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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(RIGI_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [641 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f98_E_1 identity=94.1% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341 :****************************************************************************************************: 5f98_E_1 12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111 SecStr : HHHHHHHTTGGGT EEEE SSS HHHHHHHHHHHHHTTS SSS EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTSSSSS HHHHHHT : ExpBur :eeeebbebbbebbeeeebbbbbbebebeebebbbbbbeebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebeeb: queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441 :****************************************************************************************************: 5f98_E_1 112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211 SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SHHHHHHHHHHHHHHTT EEE : ExpBur :ebbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbbbbb: queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541 :************************** *********************** ****************************************: 5f98_E_1 212:VKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICKXXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311 SecStr : TTHHHHHHHS EEEEEE - HHHHHHHHHHHHHHHHHHTT ---------- TTSHHHHHHHHHHHHHHTT SSSSHHHHHHHHHHHH: ExpBur :beeeeebbeeebeebebeeeebeebe-eebbeebbeebeeeeeeeeeeee----------eeebeeebeeebeeebbebbeeebeeeeebeeebbebebe: queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641 :*********************************** ***************************************************************: 5f98_E_1 312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411 SecStr :HHHHHHHHHHHHHHHSS HHHHHHHHHHHHHHTT -- HHHHHHHHHHHHHHHHHHHHHS SSS HHHHHHHHHHHHHHHH TT EEEEESSHHHHH: ExpBur :bebbbebbebbebbebbbbebbbeebeebbeeeee--ebeebeebeebbeebbeebeeebeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe: queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741 :********************* ****************************************************: 5f98_E_1 412:ALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511 SecStr :HHHHHHHH GGGTT EEEE --------------------------- SEEEES SSS SS SEEEEES HHHHHHHGGGG STT EEEEE: ExpBur :bbeebbeeeeebeebebbeee---------------------------eebbbbbbebebbeeeeeebebbbbbbbeeebbbbbbbbbbbeeeebebbbb: queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841 :****************************************************************************************************: 5f98_E_1 512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611 SecStr :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHTT S EEEEESSS EEEETTTEEEETTTEEEE HHHHTS: ExpBur :beeeebbeebeebeebbebbeebbeebeeeeeeebeebbeebbeeebeeeeeeeeeeeeeeeeebbbbbbbbbeebbebeebebbeeeebbbeeeebeee: queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :*********************************************************************************: 5f98_E_1 612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :EEEEE SS TT B EEEEE STTT EEEEEE SSS EEEE GGGEEEEESSS EE SSTTT S B S : ExpBur :beeeebeeeeeeeebbeebbbebebeebebebbbebeeeeeebbbbebebbbbbbeeeeebeeeebbeebebeeeebeeee: |