[pdbjlvh2]Protein Model on 5f98_E_1_S

Protein Model on 5f98_E_1_S_1 (TEMPLATE: 5f98 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	E 1 (E)	polymer(polypeptide(L)) [641 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		S 1 (E)	non-polymer(ZN)	ZINC ION	810C 813C 864C 869C (identity: 100.0 %/94.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f98_E_1 identity=94.1%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
5f98_E_1      12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111
SecStr          :   HHHHHHHTTGGGT  EEEE  SSS HHHHHHHHHHHHHTTS SSS   EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE TTSSSSS HHHHHHT :    
ExpBur          :eeeebbebbbebbeeeebbbbbbebebeebebbbbbbeebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
5f98_E_1     112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211
SecStr          :SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS      EEEEEES    TT  SHHHHHHHHHHHHHHTT  EEE :    
ExpBur          :ebbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbbbbb:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :************************** ***********************          ****************************************:
5f98_E_1     212:VKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICKXXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311
SecStr          :  TTHHHHHHHS   EEEEEE     - HHHHHHHHHHHHHHHHHHTT  ----------  TTSHHHHHHHHHHHHHHTT   SSSSHHHHHHHHHHHH:    
ExpBur          :beeeeebbeeebeebebeeeebeebe-eebbeebbeebeeeeeeeeeeee----------eeebeeebeeebeeebbebbeeebeeeeebeeebbebebe:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :***********************************  ***************************************************************:
5f98_E_1     312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411
SecStr          :HHHHHHHHHHHHHHHSS HHHHHHHHHHHHHHTT --  HHHHHHHHHHHHHHHHHHHHHS SSS  HHHHHHHHHHHHHHHH TT  EEEEESSHHHHH:    
ExpBur          :bebbbebbebbebbebbbbebbbeebeebbeeeee--ebeebeebeebbeebbeebeeebeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :*********************                           ****************************************************:
5f98_E_1     412:ALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511
SecStr          :HHHHHHHH GGGTT  EEEE ---------------------------  SEEEES  SSS SS    SEEEEES    HHHHHHHGGGG STT EEEEE:    
ExpBur          :bbeebbeeeeebeebebbeee---------------------------eebbbbbbebebbeeeeeebebbbbbbbeeebbbbbbbbbbbeeeebebbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :****************************************************************************************************:
5f98_E_1     512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHTT         S EEEEESSS  EEEETTTEEEETTTEEEE  HHHHTS:    
ExpBur          :beeeebbeebeebeebbebbeebbeebeeeeeeebeebbeebbeeebeeeeeeeeeeeeeeeeebbbbbbbbbeebbebeebebbeeeebbbeeeebeee:    
Contact         :                                                                    b  b                            

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :*********************************************************************************:
5f98_E_1     612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :EEEEE SS    TT  B EEEEE STTT  EEEEEE  SSS EEEE GGGEEEEESSS   EE SSTTT  S   B  S  :    
ExpBur          :beeeebeeeeeeeebbeebbbebebeebebebbbebeeeeeebbbbebebbbbbbeeeeebeeeebbeebebeeeebeeee:    
Contact         :                      b    b

Protein Model on 5f98_E_1_S_1 (TEMPLATE: 5f98 )

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