Protein Model on 4p4h_E_1_R_1 (TEMPLATE: 4p4h )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RIGI_HUMAN) E 1 (E) polymer(polypeptide(L)) [188 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b R 1 (U) polymer(polypeptide(L)) [72 aa] Ubiquitin-60S ribosomal protein L40 :RL40_HUMAN 105L 109R 110L 112P 113E 185L 187I (identity: 100.0 %/99.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4p4h_E_1 identity=99.5%
queryA         1:MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKL: 100
                :*************************************************** ************************************************:
4p4h_E_1       5:MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMAAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKL: 104
SecStr          : HHHHHHHHHHTHHHHHHH  HHHHTTTTTTT  HHHHHHHHHHHHHH HHHHHHHHHHHHHH  STTHHHHHHHHHHHHT TTTHHHHHHT  HHHHHT:    
ExpBur          :eeeeeeeebeeeeebbebbbbbbbbbeebeeebeeebeeebebebeeeebeebbeebbebbbebeeeebbebbbebbeebebebbbebbeeeebeebeeb:    

queryA       101:EEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIV: 188
                :****************************************************************************************:
4p4h_E_1     105:EEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIV: 192
SecStr          :HHHHHHHHHTHHHHHHH  HHHHHHHHGGGS HHHHHHHHHHHHHH HHHHHHHHHHHHHT   TTHHHHHHHHHHHTT S SSS   :    
ExpBur          :bebbeebeebeeebeeebebeebbeebeebbbeebbeebeeebeeeeeeebbebbbebbbbbbbeebbebbeebbeeeebebbeebee:    
Contact         :    b   bb bb                                                                       b b             


Input Residue Numbers for Focused Sites

ex) 2,15,123