Protein Model on 5f9h_E_1_F_1
(TEMPLATE: 
5f9h
)Protein Model on 5f9h_E_1_F_1
(TEMPLATE: 5f9h
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [638 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | F 1 (F) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 546R 635K 636T 637R 662T 663G 697T 698S 700A 718V 720N 750K 851K 853F 888K 906S 908W (identity: 100.0 %/93.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9h_E_1 identity=93.7% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:****************************************************************************************************:
5f9h_E_1 12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTT TTS HHHHHHT :
ExpBur :eeeebbebbbebbeeeebbbbbbebebeeeebbbbbbeebbeebeeeeebbbbbbbeeeebbeebeeebeeebeebebebebbbeeebeeeebeeebeeb:
Contact : bbb bb
queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
:****************************************************************************************************:
5f9h_E_1 112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211
SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE :
ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe:
Contact : b bb b bbbb
queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
:************************** ********************** ****************************************:
5f9h_E_1 212:VKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICXXXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311
SecStr : TTHHHHTTTS EEEEEE - HHHHHHHHHHHHHHHHHHHH ----------- TTSHHHHHHHHHHHHHHHH SSSHHHHHHHHHHHHH:
ExpBur :beeeeeebeebbeebebeeeebeebe-eebeebbeebbeebeebbeeee-----------eeeeeeebeeebeeeebebbeeeeeeeeebbeebbbbbbb:
Contact : b bb b
queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
:********************************* ***************************************************************:
5f9h_E_1 312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVXXXXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411
SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHH ---- SHHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH TT EEEE SSHHHHH:
ExpBur :bebbeebbbbbebbebbbbebbbeebeebbeee----eeeebbebbeebeebeeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe:
Contact : b bbb
queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
:********************** *****************************************************:
5f9h_E_1 412:ALKNWIEGNPKLSFLKPGILTGXXXXXXXXXXXXXXXXXXXXXXXXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511
SecStr :HHHHHHHT GGGTT EEEE ------------------------- SEEEES SSS S SEEEEES HHHHHHHGGGG STT EEEEE:
ExpBur :bbbebbeebeebeebebbeeee-------------------------eeebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbeeeebebbbb:
Contact : bb bb b b b
queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
:****************************************************** *********************************************:
5f9h_E_1 512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611
SecStr :ESSSHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT - B S EEEETTT EEEETTSEEEETTTEEEE SHHHHHH:
ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeeee-eeeeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebeee:
Contact : b
queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:********************************************************** **********************:
5f9h_E_1 612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATXVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :EEEEE SS TT EEEEEEE STT EEEEEEEETTEEEEEE GGGEEEE TT - EEE SSGGG B EE S :
ExpBur :beeeebeeeeeeeebebebbbbbeeeebebebbbbbbeeeeebbbbebebbbbeeeee-ebeeeeebeebebeeeebeeee:
Contact : b b b b b
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[assembly_id:1]
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