Protein Model on 5f9f_E_1_F_1
(TEMPLATE: 
5f9f
)Protein Model on 5f9f_E_1_F_1
(TEMPLATE: 5f9f
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [672 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | F 1 (F) | polymer(polyribonucleotide) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 546R 635K 636T 637R 662T 663G 664R 667T 668N 678Q 697T 698S 700A 718V 720N 750K 829C 830H 853F 858K 874G 875I 886V 887I 888K 906S 908W (identity: 100.0 %/98.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9f_E_1 identity=98.7% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:****************************************************************************************************:
5f9f_E_1 12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHSS SS EEEE SSHHHHHHHHHHHHHHSTTTT EEEE GGG SSS HHHHHHT :
ExpBur :eeeebbebbbebbeeeebbbbbbebebeeeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeebebebebbbeeeeeeeebeeebeeb:
Contact : bbb bb
queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
:****************************************************************************************************:
5f9f_E_1 112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211
SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT S EEEEEES TT SHHHHHHHHHHHHHHTT EEE :
ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeebbbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe:
Contact : b bb b bbbb
queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
:*************************************************** ****************************************:
5f9f_E_1 212:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311
SecStr : TTHHHHHTTS EEEEEE S HHHHHHHHHHHHHHHHHHHH --------- TTSHHHHHHHHHHHHHHTT SSHHHHHHHHHHHHHH:
ExpBur :beeeeebbeeebeebebeeeebeebeeeebeebbbebbeebeebbeeebee---------eebbeeebeeebeeeebebbeeeeeeeeebeebbbbbbbb:
Contact : b bb b
queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
:****************************************************************************************************:
5f9f_E_1 312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411
SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHT TTS HHHHHHHHHHHHHHHH TT EEEE S HHHHH:
ExpBur :bebbeebbbbbebbebbbbebbbeebeebbeebbeeeeeeebbebbeebeeebeebeebeeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebbe:
Contact : b bbb
queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
:****************************************************************************************************:
5f9f_E_1 412:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511
SecStr :HHHHHHHH GGGTT EEEE TTSS S HHHHHHHHHH SSSSS SEEEES SSS S S SEEEEES HHHHHHGGGGG STT EEEEE:
ExpBur :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeeebebeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebbbb:
Contact : bbb bb b bb b b b
queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
:****************************************************************************************************:
5f9f_E_1 512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611
SecStr :ES SHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHT B S EEEEETTT EEEETTTEEEETTTEEEE STTGGGS:
ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeeeeeeeeeeeeebbbbbbbbbeebbebeebbbbeeeebbbeeeebeee:
Contact : b bb
queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:*********************************************************************************:
5f9f_E_1 612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :EEEEE SS TT EEEEEEE GGG EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG B EE TT :
ExpBur :beeeebeeeeeeeebbbebbbbbebeebebbbbbebbeeebebbbbebebbbbbbeeeeebeeeeebeebebbeeebeeee:
Contact : b b bb bbb b b
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[assembly_id:1]
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