[pdbjlvh2]Protein Model on 4a2q_D

Protein Model on 4a2q_D_1 (TEMPLATE: 4a2q )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	D 1 (E)	polymer(polypeptide(L)) [670 aa]	RETINOIC ACID INDUCIBLE PROTEIN I :D3TI84_ANAPL

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4a2q_D_1 identity=50.7%

queryA         2:TTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLE: 101
                :*    ****    **   * * * *  *  *    *           *   ** ***   * *   ***** ***   *** ** **** *** * ****:
4a2q_D_1       5:TADEKRSLQCYRRYIERSLNPVYVLGNMTDWL-PDELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSKLEKLE: 103
SecStr          :  HHHHHHHHT HHHHTT  GGGTSTT TTTS- HHHHHHHHHHHTT HHHHHHHHHHHTTS   TTHHHHHHHHHHHHT HHHHHHHHTT  SHHHHHH:    
ExpBur          :eeeebeebeeeeebbeebbbbbbbbeebeeeb-eeebbeebeebeeeebeebbeebbebbbeeeeeebbebbbebbeebebeebbebbeeeebeebeebe:    

queryA       102:EYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE-RNKFSELWIVEKGIKDVETEDL: 200
                :  * ****          *   *   * ***  ***** **       **  ** *** ***** *** * ***        ****              :
4a2q_D_1     104:LHRQLLKRIEATM-LEVDPVALIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELW--------------: 188
SecStr          :HHHHHHHHHGGGG-TT  HHHHHHHHTTTS HHHHHHHHHHHHHT HHHHHHHHHHHHTT   TTHHHHHHHHHHHHT HHHHHTT--------------:    
ExpBur          :eebebbebbbbbb-bebebeebbeebeebbbeebbeebeebbeeebebbbbbebbebbbbbbeeebbebbbebbeeebeeebbebb--------------:    

queryA       201:EDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-----------------------------------------------------------: 241
                :                                                                                                    :
4a2q_D_1     189:-----------------------------------------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 247
SecStr          :----------------------------------------- ----------------------------------------------------------:    
ExpBur          :-----------------------------------------e----------------------------------------------------------:    

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :* * ** *** **  ***  ****** ****** ******    * * * **** *   ******* **   *** ** * ****       **   *  :
4a2q_D_1     248:KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGEXXXXXSVEKVIEDS: 347
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHT  SS    EEEE SSHHHHHHHHHHHHHHHGGGT  EEEE   ----- HHHHHHT :    
ExpBur          :eeeebbebbbebbeeeebbbbbbeeebebeebbbbbbbebbeebeeeeebbbbbbbbeeeebeebeeebeeebeeeeeebeebeee-----ebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :***  *******    **  ****************   ****  *  ** **   *   ***  ********* ***  *    ** **  **   * *:
4a2q_D_1     348:DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF-NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST: 446
SecStr          :SEEEE HHHHHHHHHSSS   GGG SEEEETTGGG STTSHHHHHHHHHHHHHH-TT     EEEEEES    TT  SHHHHHHHHHHHHHHHT SEEE :    
ExpBur          :ebbbbbbebbbebbeeeebeebeebbbbbbbebeebeeeebbbebbeebbebee-eeeeeebbbbbbbeebebeebeeeeebbeebbebbbebbbebbbb:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :*  *  **     **    * *  **   *  **  **  ** *   *              **** ** ***  *  *   *  ** ****** ***  :
4a2q_D_1     447:VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTI-XXXXXXXXXXXXXFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC: 545
SecStr          :  TTHHHHHHHS    EEEEE    S  HHHHHHHHHHHHHHHHHHH --------------  SHHHHHHHHHHHHHHHH   SSHHHHHHHHHHHHHH:    
ExpBur          :beeeeeebeeeeeebebeeeebeeeeeeebbebbeebbeebbeebeee--------------eeeeebbeebeebbeebeeeeeeeeeebeeebebbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :* ************* **  *** **  ** **      * ** **  * **  **   * *  ******* *  **   *  ** * * ** ****** :
4a2q_D_1     546:TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS: 645
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHHHHHHHHHHHH GGG  TTHHHHHHHHHHHHHH SS  EEEE SSHHHHH:    
ExpBur          :bbbbbbbbbbbbbbebbbbebbbeebeebbebbeebeeeebbeebbeebeeeeeebeeeeeeeeeebbbbeebbebbbebbeeeeebebbbbbebebbbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :***   * ** *   *** *                            *   ****          ***** **** *** ****        **** * :
4a2q_D_1     646:ALKKCMEENPILNYIKPGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNRLLIATXXXXXXXXXVQCNLVVLYEYSGNVTKMIQVXXXXXXXGSKCILV: 745
SecStr          :HHHHHHHT STTTT   EE ----------------------------  SEEEE ---------   SEEEEES  S SHHHHH -------   EEEE:    
ExpBur          :bbeebbeebeebeebebbee----------------------------eeebebbe---------eeeebbbbbbeeeebeebbee-------eeebbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI: 790
                :**   * * *  * *** ***      * ***  *  **   *  *   :
4a2q_D_1     746:TSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVL: 794
SecStr          :E  SSSHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHT :    
ExpBur          :beeeeeeeebeeeeeeeebbeebbeebeeeeeeebeeebeebbeeeeee:

Protein Model on 4a2q_D_1 (TEMPLATE: 4a2q )

Input Residue Numbers for Focused Sites