Protein Model on 6kyv_D_1_N_1 (TEMPLATE: 6kyv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) D 1 (D) polymer(polypeptide(L)) [672 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b N 1 (D) non-polymer(ZN) ZINC ION 810C 813C 864C 869C (identity: 100.0 %/99.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6kyv_D_1 identity=99.3%
queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
6kyv_D_1       4:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 103
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHSS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE SSS TTS HHHHHHH :    
ExpBur          :eeeebbebbbebbeeeebbbbbbebebebeebbbbbbeebbeeeeeeeebbbbbbbbeeebbeebeeebeebbeeeebebebbbeeebeeeebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
6kyv_D_1     104:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 203
SecStr          :SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG SSS HHHHHHHHHHHHHHSS  S   EEEEEES    TT  SHHHHHHHHHHHHHHHT SEEE :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeebbbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbb:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :****************************************************************************************************:
6kyv_D_1     204:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 303
SecStr          :  SSHHHHHTTS   EEEEEE       HHHHHHHHHHHHHHHHHHTTSSSGGGSSS  S  TTSHHHHHHHHHHHHHTTS   TTSSHHHHHHHHHHHH:    
ExpBur          :beeeeeebeeebeebebeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeebebeeeebbebbeebeeebbeeeeeeeeebeebbbbbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :***********************************   **************************************************************:
6kyv_D_1     304:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXXDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 403
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH  --- HHHHHHHHHHHHTHHHHHHHHT TT   HHHHHHHHHHHHHHHH TT  EEEE SSHHHHH:    
ExpBur          :bebbeebbbbbebbeebbbebbbeebeebbeeeee---eeebeebbeebeeeeeebeebeeeeeeebebbebbbebbeebbeeeeebbbbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :****************************************************************************************************:
6kyv_D_1     404:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 503
SecStr          :HHHHHHHT GGGTT   EEE     TTSS S  HHHHHHHHHHSSSSSS SEEEE    SS S     SEEEEES    HHHHHHGGGG  STT EEEEE:    
ExpBur          :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbebeebbeeebeebbbbbbeeebeeeebeebebbbbbbbeeebbebbbbbbbbbeeebbbbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :*****************************************************  *********************************************:
6kyv_D_1     504:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 603
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHT  --       S EEEEETTT  EEEEGGGEEEETTTEEEE SHHHHTT:    
ExpBur          :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeeeebebbbbbbbeebbebeebebbeeeebbbeeeebeee:    
Contact         :                                                                    b  b                            

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
                :*****************************************************************************:
6kyv_D_1     604:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 680
SecStr          :EEEEE SS  EETTEEEEEEEEE GGG   EEEEEEE SSSEEEEE GGGEEEEESSS  EE  SSGGGS S  EE :    
ExpBur          :beeeebeeeeeeeebebebbbbbebeebebebbbbbbeeeeebbbbebebbbbbeeeebebeeeeebeebebeeeee:    
Contact         :                      b    b

Input Residue Numbers for Focused Sites

ex) 2,15,123