[pdbjlvh2]Protein Model on 5jch_D_1_J

Protein Model on 5jch_D_1_J_1 (TEMPLATE: 5jch )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	D 1 (B)	polymer(polypeptide(L)) [655 aa]	Melanoma differentiation associated protein-5 :D9N195_CHICK
2	b		J 1 (B)	non-polymer(ZN)	ZINC ION	810C 813C 864C 869C (identity: 100.0 %/36.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5jch_D_1 identity=36.3%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
                :* ** * * **  * * *** *** *** *   *   ** **      ***    *  *  **        *  * * * * **           *   *:
5jch_D_1       9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr          : HHHHHHHHHHHHT  EEEE  TTS HHHHHHHHHHHHHHHHHHTT    EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS  SS HHHHHHH S:    
ExpBur          :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe:    

queryA       343:IIILTPQILVNNLKKGTIPS----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
                : ** * *** * *           ** * * * * ** * *   ** **  **  *              * **  ***** *** *     *   * * :
5jch_D_1     109:VIICTAQILENSLLNXXXXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr          :EEEEEHHHHHHHHH -----    GGG SEEEEESGGG STT HHHHHHHHHHHHHHHHHHHHH ---     EEEEEES    SS SSHHHHHHHHHHH:    
ExpBur          :bbbbbbebbbebbee-----eebebeebbbbbbbbbbebeeeeebbbbbbebbeebeeeeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb:    

queryA       431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
                :** ***  * ***     *   *  * *          * *   *   * *         *           *** * ****                  :
5jch_D_1     209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr          :HHHTT SEEEE  TTHHHHHHHS   EEEEEEE   S  HHHHHHHHHHHHHHHHHT   SS---------- TTSHHHHHHHHHHHHHH----HHTT H:    
ExpBur          :bbbbbbeebbebeeeeeebeeebeebeeeeeebeeeeeeebeeebbebbeebbebbebeeee----------ebbeeebeebbeebbeeb----beeeee:    

queryA       531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
                :  * *        ** ****** *    ** **   *  *                       **    *   *  *   *    * *   * **  *  :
5jch_D_1     295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDXXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr          :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS  S  ------    HHHHHHHHHHHHHHHHHHHHHT GGGS HHHHHHHH:    
ExpBur          :ebbbb------bebbbbbbbbbebbeebbbebbbebbbebbeebebbbeeeeee------ebeeebbeebbebbeeeeeebeeebeeeeebbebbeebee:    

queryA       617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
                : * **     *   * * ***    **  **  ***      *   * * *       **   *    * *   *  * **** ** ** **  ** ** :
5jch_D_1     389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr          :HHHHHHSSSSS  EEEE SSHHHHHHHHHHHHTSHHHHHHT  EEEE    S SSS    HHHHHHHHHHHHH-TS  EEEE GGGTSSS    BSEEEE:    
ExpBur          :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebebbbbeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:    

queryA       715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809
                :*  * * * * * *** **  *   *   *  *  * *  *   * **   * * *         **   *     **                     *:
5jch_D_1     488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587
SecStr          :ES    HHHHHHHHHHB STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHT --------- EEE:    
ExpBur          :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------eebb:    

queryA       810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTLYS: 906
                :*  *  * *   *  ***  *       *      *                 * *    *   **    *     *  **  ***  **          :
5jch_D_1     588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEIFK: 684
SecStr          :ETTT  EEEEGGGEEEETTTEEEE  TT GGGEEEE  ----------  S EEEE--TTT  EEEEEEESSS EEEEE GGGEEEE   ---- EE  S:    
ExpBur          :bbbebbebbebebbebbeeeebbbeeeebeeebbebee----------eeeebbbb--eebbbbbbebbeeeeeeebbbebebbbbbeee----eeebbe:    
Contact         :b  b                                                   b    b                                       

queryA       907:KWKDF: 911
                :**   :
5jch_D_1     685:KWGEL: 689
SecStr          :SGGGS:    
ExpBur          :ebeeb:

Protein Model on 5jch_D_1_J_1 (TEMPLATE: 5jch )

Input Residue Numbers for Focused Sites