[pdbjlvh2]Protein Model on 5jcf_D_1_J

Protein Model on 5jcf_D_1_J_1 (TEMPLATE: 5jcf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	D 1 (B)	polymer(polypeptide(L)) [660 aa]	Melanoma differentiation associated protein-5 :D9N195_CHICK
2	b		J 1 (B)	non-polymer(ADP)	ADENOSINE-5'-DIPHOSPHATE	244R 247Q 265P 266T 267G 268C(S) 269G 270K 272F(R) 310F(E) 732R (identity: 72.7 %/36.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5jcf_D_1 identity=36.5%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
                :* ** * * **  * * *** *** *** *   *   ** **      ***    *  *  **        *  * * * * **           *   *:
5jcf_D_1       9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr          : HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHHHHHTT    EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS  SS HHHHHHH S:    
ExpBur          :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebbebbeebe:    
Contact         :b  b                 bbbbbb b                                      b                                

queryA       343:IIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
                : ** * *** * *   *       ** * * * * ** * *   ** **  **  *              * **  ***** *** *     *   * * :
5jcf_D_1     109:VIICTAQILENSLLNATEXDESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKXXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr          :EEEEEHHHHHHHHHTS  -     GGG SEEEEETGGG STTSHHHHHHHHHHHHHHHHHHHH ----     EEEEEES    TT SSHHHHHHHHHHH:    
ExpBur          :bbbbbbebbbebbeeeee-eebbebeebbbbbbbbbbebeeeeebbbbbbebbebeeebeeeee----eeeebbbbbbbbbbbbeebeeeeebbebbbeb:    

queryA       431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
                :** ***  * ***     *   *  * *          * *   *   * *         *           *** * ****                  :
5jcf_D_1     209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr          :HHHTT SEEE   TTHHHHHHHS   EEEEEEE   S  HHHHHHHHHHHHHHHHHT   SS---------- TTSHHHHHHHHHHHHHH----HHTT H:    
ExpBur          :bbbbbbeebbebeeeeeebeeebeebeeeebebeeeeebebeeebbebbeebbebbebeeee----------ebbeeebeebbeeebeeb----beeeeb:    

queryA       531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
                :  * *        ** ****** *    ** **   *  *                       **    *   *  *   *    * *   * **  *  :
5jcf_D_1     295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr          :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS  SS  -----    HHHHHHHHHHHHHHHHHHHHTT GGGS HHHHHHHH:    
ExpBur          :eebbb------bebbbbbbbbbebbeebbbebbbebbbebbeebeebbeeeeeee-----ebeeebbeebeebbeebbeebeeebeeeeebbebbeebee:    

queryA       617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
                : * **     *   * * ***    **  **  ***      *   * * *       **   *    * *   *  * **** ** ** **  ** ** :
5jcf_D_1     389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr          :HHHHHHTTSSS  EEEE S HHHHHHHHHHHHS HHHHHTT  EEEE    S SSS    HHHHHHHHHHHHH-TS  EEEE GGGTSSS     SEEEE:    
ExpBur          :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbeeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebbbeebbbbbb:    

queryA       715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809
                :*  * * * * * *** **  *   *   *  *  * *  *   * **   * * *         **   *     **                     *:
5jcf_D_1     488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587
SecStr          :ES    HHHHHHHHHH  STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHT --------- EEE:    
ExpBur          :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------ebbb:    
Contact         :                 b                                                                                  

queryA       810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTLYS: 906
                :*  *  * *   *  ***  *       *      *                 * *    *   **    *     *  **  ***  **          :
5jcf_D_1     588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEIFK: 684
SecStr          :ETTT  EEEEGGGEEEETTTEEEE  TT GGGEEEE  ----------  S EEEE--TTT  EEEEEEEETTEEEEEE GGGEEEE   ---- EE  S:    
ExpBur          :bbbebbebbeeebbebbeeeebbbeeeebeeebbebee----------eeebbbbb--eebbbbbbebbeeeeeebbbbebebbbbbbee----eeebbe:    

queryA       907:KWKDF: 911
                :**   :
5jcf_D_1     685:KWGEL: 689
SecStr          :SGGGS:    
ExpBur          :ebeeb:

Protein Model on 5jcf_D_1_J_1 (TEMPLATE: 5jcf )

Input Residue Numbers for Focused Sites