Protein Model on 5jch_D_1_F_1
(TEMPLATE: 
5jch
)Protein Model on 5jch_D_1_F_1
(TEMPLATE: 5jch
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | D 1 (B) | polymer(polypeptide(L)) [655 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | F 1 (V) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 298N 299Q(K) 300I(V) 301P 325S 326G 327A(D) 347T 349Q 353N 510E 511Q 514V(I) 515T(R) 518K(R) 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 675L(Q) 678Q 697T 698S(T) 699V 794Q(R) 906S(K) (identity: 56.7 %/36.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jch_D_1 identity=36.3% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jch_D_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHHT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe:
Contact : bbbb bbb
queryA 343:IIILTPQILVNNLKKGTIPS----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jch_D_1 109:VIICTAQILENSLLNXXXXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH ----- GGG SEEEEESGGG STT HHHHHHHHHHHHHHHHHHHHH --- EEEEEES SS SSHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbee-----eebebeebbbbbbbbbbebeeeeebbbbbbebbeebeeeeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb:
Contact : b b b
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jch_D_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeeeebeeeeeeebeeebbebbeebbebbebeeee----------ebbeeebeebbeebbeeb----beeeee:
Contact : bb bb b
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jch_D_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDXXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS S ------ HHHHHHHHHHHHHHHHHHHHHT GGGS HHHHHHHH:
ExpBur :ebbbb------bebbbbbbbbbebbeebbbebbbebbbebbeebebbbeeeeee------ebeeebbeebbebbeeeeeebeeebeeeeebbebbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jch_D_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHHSSSSS EEEE SSHHHHHHHHHHHHTSHHHHHHT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS BSEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebebbbbeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:
Contact : bbb bbbb b b b bbb
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809
:* * * * * * *** ** * * * * * * * * ** * * * ** * ** *:
5jch_D_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587
SecStr :ES HHHHHHHHHHB STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHT --------- EEE:
ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------eebb:
Contact : b
queryA 810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTLYS: 906
:* * * * * *** * * * * * * ** * * ** *** ** :
5jch_D_1 588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEIFK: 684
SecStr :ETTT EEEEGGGEEEETTTEEEE TT GGGEEEE ---------- S EEEE--TTT EEEEEEESSS EEEEE GGGEEEE ---- EE S:
ExpBur :bbbebbebbebebbebbeeeebbbeeeebeeebbebee----------eeeebbbb--eebbbbbbebbeeeeeeebbbebebbbbbeee----eeebbe:
Contact : b
queryA 907:KWKDF: 911
:** :
5jch_D_1 685:KWGEL: 689
SecStr :SGGGS:
ExpBur :ebeeb:
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[assembly_id:2]
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