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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | D 1 (B) | polymer(polypeptide(L)) [660 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
2 | b | F 1 (D) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 298N 299Q(K) 300I(V) 301P 325S 326G 327A(D) 347T 349Q 353N 510E 511Q 514V(I) 518K(R) 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 669Q(E) 675L(Q) 678Q 697T 698S(T) 699V 906S(K) (identity: 58.6 %/36.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5jcf_D_1 identity=36.5% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342 :* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *: 5jcf_D_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S: ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebbebbeebe: Contact : bbbb bbb queryA 343:IIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430 : ** * *** * * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * : 5jcf_D_1 109:VIICTAQILENSLLNATEXDESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKXXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208 SecStr :EEEEEHHHHHHHHHTS - GGG SEEEEETGGG STTSHHHHHHHHHHHHHHHHHHHH ---- EEEEEES TT SSHHHHHHHHHHH: ExpBur :bbbbbbebbbebbeeeee-eebbebeebbbbbbbbbbebeeeeebbbbbbebbebeeebeeeee----eeeebbbbbbbbbbbbeebeeeeebbebbbeb: Contact : b b b queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530 :** *** * *** * * * * * * * * * * *** * **** : 5jcf_D_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294 SecStr :HHHTT SEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H: ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeebebeeeeebebeeebbebbeebbebbebeeee----------ebbeeebeebbeeebeeb----beeeeb: Contact : bb b b queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616 : * * ** ****** * ** ** * * ** * * * * * * * ** * : 5jcf_D_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388 SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS SS ----- HHHHHHHHHHHHHHHHHHHHTT GGGS HHHHHHHH: ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbebbbebbeebeebbeeeeeee-----ebeeebbeebeebbeebbeebeeebeeeeebbebbeebee: queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714 : * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** : 5jcf_D_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487 SecStr :HHHHHHTTSSS EEEE S HHHHHHHHHHHHS HHHHHTT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS SEEEE: ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbeeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebbbeebbbbbb: Contact : bbb bbbb bb b b bbb queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809 :* * * * * * *** ** * * * * * * * * ** * * * ** * ** *: 5jcf_D_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587 SecStr :ES HHHHHHHHHH STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHT --------- EEE: ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------ebbb: queryA 810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTLYS: 906 :* * * * * *** * * * * * * ** * * ** *** ** : 5jcf_D_1 588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEIFK: 684 SecStr :ETTT EEEEGGGEEEETTTEEEE TT GGGEEEE ---------- S EEEE--TTT EEEEEEEETTEEEEEE GGGEEEE ---- EE S: ExpBur :bbbebbebbeeebbebbeeeebbbeeeebeeebbebee----------eeebbbbb--eebbbbbbebbeeeeeebbbbebebbbbbbee----eeebbe: Contact : b queryA 907:KWKDF: 911 :** : 5jcf_D_1 685:KWGEL: 689 SecStr :SGGGS: ExpBur :ebeeb: |