Protein Model on 5f9f_C_1_V_1 (TEMPLATE: 5f9f )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) C 1 (C) polymer(polypeptide(L)) [668 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b V 1 (C) non-polymer(BU3) (R,R)-2,3-BUTANEDIOL 376N 381H 700A 701D (identity: 100.0 %/97.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5f9f_C_1 identity=97.9%
queryA       241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
                :****************************************************************************************************:
5f9f_C_1      11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr          :    HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHHS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE GGG TTS HHHHHHT:    
ExpBur          :eeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeeeeeeeebbbbbbbebeebbeebeeebeeebeeeebebebbbeeebeeeebeeebee:    

queryA       341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
                :****************************************************************************************************:
5f9f_C_1     111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr          : SEEEE HHHHHHHHHHSSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS  S   EEEEEES    TT SSHHHHHHHHHHHHHHTT  EEE:    
ExpBur          :bebbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbebb:    
Contact         :                                   b    b                                                           

queryA       441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
                :****************************************************          **************************************:
5f9f_C_1     211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXXEFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr          :   TTHHHHTTTS   EEEEEE       HHHHHHHHHHHHHHHHHHTTS  ----------  SSHHHHHHHHHHHHHHTT   SSHHHHHHHHHHHHH:    
ExpBur          :ebeeeeeebeeebeebebeeeebeeeeeeebeebbbebbeebbebbeeebee----------ebbeeebeeebeeebeebbeeeeeeeeebbebbbbbbb:    

queryA       541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
                :****************************************************************************************************:
5f9f_C_1     311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr          :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS   HHHHHHHHHHHTTHHHHHHHTT SS   HHHHHHHHHHHHHHHH TT  EEEE S HHHH:    
ExpBur          :bbebbeebbbbbebbebbbbebbbeebeebbeebeeeeeeebbeebbeebeeeeeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebb:    

queryA       641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
                :****************************************************************************************************:
5f9f_C_1     411:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr          :HHHHHHHHH GGGTT   EEE     TTSS S  HHHHHHHHHH SSSSS SEEEES  SSS S  S  SEEEEES    HHHHHHHGGG  STT EEEE:    
ExpBur          :ebbeebbeeeeebeebebbbbbeeeeeeeeeebeeeeebeeeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbebbbbbeeebebbb:    
Contact         :                                                           bb                                       

queryA       741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
                :******************************************************    ******************************************:
5f9f_C_1     511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr          :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHT  ----   B S EEEEETTT  EEEEGGGEEEETTTEEEE SSSGGG:    
ExpBur          :bbbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee----eeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebee:    

queryA       841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :**********************************************************************************:
5f9f_C_1     611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :SEEEEE SS    TTEEEEEEEEE GGG   EEEEEEEETTEEEEEE GGGEEEEESSS  EEE SSGGG  B  EE  TT :    
ExpBur          :ebeeeebeeeeeeeebebebbbbbeeeebebbbbbebebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123