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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [631 aa] | Antiviral innate immune response receptor RIG-I :DDX58_HUMAN | |
2 | b | F 1 (Y) | polymer(polyribonucleotide) | p3dsRNA24b | 379K 380Q 381H 498Q 499I 507Q 508K 511Q 635K 718V 750K 828E 829C 830H 851K 853F 858K 875I 888K 907K 908W 909K (identity: 100.0 %/92.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8g7u_C_1 identity=92.4% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339 :****************************************************************************************************: 8g7u_C_1 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339 SecStr : SHHHHTTHHHHTT BEE SSSHHHHHHHHHHHHHHTT TT EEEE SHHHHHHHHHHHHHHHTTTT B TTS S S HHHHTT: ExpBur :eeeeeebbebbbebbeeeebbbbbbeeeebbbbbbbbbbbebbeeeeeeeebbbbbbbeeeeebeebeeebeebbeeeeeeebbbbeeeeeeeebeebbe: queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439 :****************************************************************************************************: 8g7u_C_1 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439 SecStr :S SEE THHHHHHHHTTSS GGG SEEEEESGGG SS HHHHHHHHHHHHHSSS S EEEEE S TT SHHHHHHHHHHHHHHTT B : ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbebeebeeeeebbebbbebbebebeeeeeeebbbbbbbbebebeebeeeeebbeebbebbbebbbbeb: Contact : bbb queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539 :****************************************************************************************************: 8g7u_C_1 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539 SecStr : S HHHHTTT EE EE S HHHHHHHHHHHHHHHHHHHHHS GGGS SSSHHHHHHHHHHHHHHTS S HHHHHHHHHHHH: ExpBur :bbbeebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeebbeebeeebebeebebbeeebbebbeebbeebbeeeeeeeeebbebbbbbb: Contact : bb bb b queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639 :****************************************************************************************************: 8g7u_C_1 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639 SecStr :HHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHHHHHHS SSS HHHHHHHHHHHHHHHH TT B B SSSHH: ExpBur :bbbebbeebbebbebbeebbbebbbeebeebbeebeeebebebbeebbeebeeebeebbebbeeeebebebbebbbebbeebbeeeeebebebbbeeeeb: Contact : b queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739 :********************** ********** ********** ******: 8g7u_C_1 640:VDALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXXXXCNLVILYEYVXXXXXXXXXXXXXXXRGSKCF: 739 SecStr :HHHHHHHHHT SS S EE ---------------------------- SBEE S --------- B EES --------------- EE : ExpBur :bebbeebbeebeebeebebbee----------------------------eebbebbeee---------eebebbbbee---------------eebbbb: Contact : b queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839 :****************************************************************************************************: 8g7u_C_1 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839 SecStr :EEESSTTHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHTT EEEEESSS EEEEGGGEEESSSS EEE SGGG: ExpBur :bbbeeeebbeebeeeeeeeebbeebbeebeeeeeeebeeebeebbeeeeeeeeeeeeeeeeeeeeebebbbbbbbbebbebeebebbeeeebbbeeeebe: Contact : b bbb queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :***********************************************************************************: 8g7u_C_1 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 SecStr :GSEEEE SS SS EEEEEEEE SSS EEEEEEE SSSEEEEE GGGEEEEESSS EE TTTS S B TT : ExpBur :eebeeeeeeeeeeeeebebebebbbeeebbebebbeebbeeeeebbbbebebbbbbeeeebebeeeeebeebebeeeebeeee: Contact : b b b b b bbb |