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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [616 aa] | Antiviral innate immune response receptor RIG-I :DDX58_HUMAN | |
2 | b | F 1 (Y) | polymer(polyribonucleotide) | p3dsRNA24b | 379K 380Q 499I 507Q 508K 511Q 750K 829C 830H 847H 853F 858K 861K 888K 908W 909K (identity: 100.0 %/90.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8g7t_C_1 identity=90.5% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 :****************************************************************************************************: 8g7t_C_1 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 SecStr : HHHHHHTTTTTTTS B B SSSHHHHHHHHHHHHHHHHT TT EEE SHHHHHHHHHHHHHHTTTTT B TTT TT HHHHHHH: ExpBur :eeeeebbebbbeebeeeebbbbbbeeeebbbebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeebeeebbbeeebeeeebeebbee: queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 :****************************************************************************************************: 8g7t_C_1 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 SecStr : SB HHHHHHHHHHSSS GGG SBEEEETGGGTTSS HHHHHHHHHHHHHTTS S B EEBS S SHHHHHHHHHHHHHHHT B : ExpBur :bbbbbbbbebbbebbeeeebeebbebebbbbbbbeebeeeeebbebbeebbeeeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbbb: Contact : bb queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 :****************************************************************************************************: 8g7t_C_1 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 SecStr : SS HHHHTTS B EEE S HHHHHHHHHHHHHHHHHTTT SS TTSS SS TTSHHHHHHHHHHHHHTTS TTSSSHHHHHHHHHH: ExpBur :ebeeeeeeeeeeeeeeeeeeeeeeebeeeebbebbbebbeebbebbeeebeebeeebeeeebebeeeebbebbeebbebbbeeeeeeeeebeebbbbbbb: Contact : b bb b queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 :****************************************************************************************************: 8g7t_C_1 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 SecStr :HHHHHHHHHHHHHHHHHS THHHHHHHHHHHHHHHTT HHHHHHHHHHHHSHHHHHHHHH SSS THHHHHHHHHHHHHHH S EEEE S HHHH: ExpBur :bbbbbeebbebbebbeebbbebbbeebeebbeebeeebeeebbeebbeebeeebeebeebbeeeebbbebbebbbebbeebbeeeeebebebbbeeeebb: queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740 :****************** ********* ********* *****: 8g7t_C_1 641:DALKNWIEGNPKLSFLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNILIATSVXXXXXXXXXXNLVILYEYVXXXXXXXXXXXXXXXXXSKCFL: 740 SecStr :HHHHHHHSSSSS S -------------------------------- EE S ---------- EEEEES ----------------- EEEE: ExpBur :ebbeebbeeeeebeebee--------------------------------eebeeeeee----------ebbbbbbee-----------------eebbb: queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 :***************************************************** *****************************************: 8g7t_C_1 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSXXXXXXVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 SecStr :EESSTHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHH ------ EEEE SSS EEEETTSEEESSSS EEE SSSSS: ExpBur :bbeeeebbeebeeeeebeebbeebbeebeeeeeeebeeebeebbeeebeeeee------eeeeeebbbbbbbbbeebbebeebebbeeeebbbeeeebee: Contact : b bb queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921 :*********************************************************************************: 8g7t_C_1 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921 SecStr :SEEEEE SS SS EEEEE SSS EEEEEEE SSSEEEEE STT EEEESSS EE SSGGG EE : ExpBur :bbeeeebeeeeeeeebebebebbbeeeebebebbbbbebeeeebbbbebebbbbbbeeebebeeeeebeebebbeeebeee: Contact : b b b b b bb |