Protein Model on 5f9h_C_1_D_1
(TEMPLATE: 
5f9h
)Protein Model on 5f9h_C_1_D_1
(TEMPLATE: 5f9h
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [647 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | D 1 (D) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 330E 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 697T 698S 700A 718V 720N 829C 851K 853F 888K 907K 908W (identity: 100.0 %/94.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9h_C_1 identity=94.9% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
:****************************************************************************************************:
5f9h_C_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTT TTS HHHHHHT:
ExpBur :eeeeebbebbbeebeeeebbbbbbebebebeebbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeebebebbbeeebeeeebeeebee:
Contact : bbb bb b
queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
:****************************************************************************************************:
5f9h_C_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr : SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE:
ExpBur :bbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbb:
Contact : b bb b bbbb
queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
:**************************************************** ***************************************:
5f9h_C_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr : TTHHHHTTTS EEEEEE S SHHHHHHHHHHHHHHHHHHH --------- TTSHHHHHHHHHHHHHHTS SSHHHHHHHHHHHHH:
ExpBur :bbeeeeebbeeebeebeeeeeebeebeeebbbebbeebbbbbeebeeeeeee---------eeeeeeebeeebeeeeeebbeeeeeeeeebbebbbbbbb:
Contact : b bb b b
queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
:****************************************************************************************************:
5f9h_C_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHH HHHHHHHHHHHHSHHHHHHHHS GGG HHHHHHHHHHHHHHHH TT EEEE S HHHH:
ExpBur :bbebbeebbbbbebbebbbbebbbeebeebbeebeeeeeeebbeebbeebeeeeeebeebeeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebb:
Contact : b bbb
queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
:************************** ******************************************************:
5f9h_C_1 411:DALKNWIEGNPKLSFLKPGILTGRGKXXXXXXXXXXXXXXXXXXXXASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr :HHHHHHHHT GGGTT EEEE S -------------------- SS SEEEES SSS S S SEEEEES HHHHHHHGGGG STT EEEE:
ExpBur :ebbeebbeebeebeebebbeeeeeee--------------------eeeeebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebbb:
Contact : bbb bb b b b
queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
:***************************************************** *****************************************:
5f9h_C_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSXXXXXXVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr :EESSSHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHT ------ B S EEEEETTT EEEETTSEEEETTTEEEE SSSGGG:
ExpBur :bbbeebbbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeee------eeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebee:
Contact : b
queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:**********************************************************************************:
5f9h_C_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :SEEEEE SS EETTEEEEEEEEE GGG EEEEEEEETTEEEEEE GGGEEEEETTT EE SSTTT B EE TT :
ExpBur :ebeeeebeeeeeeeebebebbbebeeeebebebbbebebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:
Contact : b b b bb
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[assembly_id:1]
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