Protein Model on 5f9f_C_1_D_1
(TEMPLATE: 
5f9f
)Protein Model on 5f9f_C_1_D_1
(TEMPLATE: 5f9f
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [668 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | D 1 (D) | polymer(polyribonucleotide) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 667T 668N 697T 698S 700A 718V 720N 750K 829C 830H 853F 858K 874G 875I 886V 888K 906S 907K 908W 909K (identity: 100.0 %/97.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9f_C_1 identity=97.9% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
:****************************************************************************************************:
5f9f_C_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE GGG TTS HHHHHHT:
ExpBur :eeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeeeeeeeebbbbbbbebeebbeebeeebeeebeeeebebebbbeeebeeeebeeebee:
Contact : bbb bb
queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
:****************************************************************************************************:
5f9f_C_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr : SEEEE HHHHHHHHHHSSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS S EEEEEES TT SSHHHHHHHHHHHHHHTT EEE:
ExpBur :bebbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbebb:
Contact : b bb b bbbb
queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
:**************************************************** **************************************:
5f9f_C_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXXEFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr : TTHHHHTTTS EEEEEE HHHHHHHHHHHHHHHHHHTTS ---------- SSHHHHHHHHHHHHHHTT SSHHHHHHHHHHHHH:
ExpBur :ebeeeeeebeeebeebebeeeebeeeeeeebeebbbebbeebbebbeeebee----------ebbeeebeeebeeebeebbeeeeeeeeebbebbbbbbb:
Contact : b bb b b
queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
:****************************************************************************************************:
5f9f_C_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHTTHHHHHHHTT SS HHHHHHHHHHHHHHHH TT EEEE S HHHH:
ExpBur :bbebbeebbbbbebbebbbbebbbeebeebbeebeeeeeeebbeebbeebeeeeeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebb:
Contact : b bbb
queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
:****************************************************************************************************:
5f9f_C_1 411:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr :HHHHHHHHH GGGTT EEE TTSS S HHHHHHHHHH SSSSS SEEEES SSS S S SEEEEES HHHHHHHGGG STT EEEE:
ExpBur :ebbeebbeeeeebeebebbbbbeeeeeeeeeebeeeeebeeeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbebbbbbeeebebbb:
Contact : bbb bb bb b b b
queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
:****************************************************** ******************************************:
5f9f_C_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHT ---- B S EEEEETTT EEEEGGGEEEETTTEEEE SSSGGG:
ExpBur :bbbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee----eeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebee:
Contact : b bb
queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:**********************************************************************************:
5f9f_C_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :SEEEEE SS TTEEEEEEEEE GGG EEEEEEEETTEEEEEE GGGEEEEESSS EEE SSGGG B EE TT :
ExpBur :ebeeeebeeeeeeeebebebbbbbeeeebebbbbbebebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:
Contact : b b bb b b bbbb
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[assembly_id:1]
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