Protein Model on 6gpg_C_1_B_1
(TEMPLATE: 
6gpg
)Protein Model on 6gpg_C_1_B_1
(TEMPLATE: 6gpg
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | C 1 (A) | polymer(polypeptide(L)) [651 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | B 1 (C) | polymer(polyribonucleotide) | RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*G)-3') | 298N 299Q 300I 301P 325S 326G 347T 349Q 350I 353N 379K 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 697T 698S 700A 830H 853F 854S 906S 910D (identity: 100.0 %/95.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6gpg_C_1 identity=95.0% |
queryA 239:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 338
:***************************** **********************************************************************:
6gpg_C_1 28:SPFKPRNYQLELALPAMKGKNTIICAPTGFGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 127
SecStr : S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHS TT EEEE SSHHHHHHHHHHHHHHHGGGT EEEE GGG TTS HHHHH:
ExpBur :eeeeeeebbebbbebbeeeebbbbbbebebebebbbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeebebbbeeebeeeebeeeb:
Contact : bbbb bb
queryA 339:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438
:****************************************************************************************************:
6gpg_C_1 128:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 227
SecStr :HT SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG SSSSHHHHHHHHHHHHHHSS EEEEEES S SHHHHHHHHHHHHHHTT E:
ExpBur :eebebbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbb:
Contact : b bb b b
queryA 439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538
:******************************************************* **************************************:
6gpg_C_1 228:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 327
SecStr :EE STTHHHHTTTS EEEEEE S HHHHHHHHHHHHHHHHHHHHT ------- TTSSHHHHHHHHHHHHHTT S SHHHHHHHHHH:
ExpBur :bbbbeeeeebbeeebeebebeeeebeebeeeebeeebbebbeebbebeeeeeeee-------eeeeeeeebeeebeeebeebbeeeeeeeeebeebbbbb:
Contact : bb b b
queryA 539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638
:****************************************************************************************************:
6gpg_C_1 328:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 427
SecStr :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHHHHHHS TT HHHHHHHHHHHHHHHH TT EEEE SSHH:
ExpBur :bbbbebbeebbbbbebbebbbbbbbbeebeebbeeeeeeeeeebbeebbebbeeeeeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeee:
Contact : b bbb
queryA 639:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 738
:************************* *************************************************:
6gpg_C_1 428:LVDALKNWIEGNPKLSFLKPGILTGXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 527
SecStr :HHHHHHHHHHH GGGTT EEEE -------------------------- SEEEES SSS S SEEEEES HHHHHHHGGGG STT EE:
ExpBur :bbebbbebbeeeeebeebebbeeee--------------------------eeebbbbeeeebbeeeeeebebbbbbbbeeebbebbbbbbbbeeeebeb:
Contact : bb bb b
queryA 739:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 838
:****************************************************************************************************:
6gpg_C_1 528:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 627
SecStr :EEEES HHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHH EEEESSS EEEEGGG EETTTEE SHHH:
ExpBur :bbbbbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeeebeeebeeeeeeeeeeeeeeeeebbbbbbbbbbebbebebbbbbeeeebbbeeeeb:
Contact : b
queryA 839:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:************************************************************************************:
6gpg_C_1 628:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 711
SecStr :HHSEEEEE S TT EEEEEEEE STTT EEEEEEEETTEEEEEE GGGEEE TTT B SSTT S B TT :
ExpBur :eeebeeeeeeeeeeeeebebebebebeeeebebebbbbbeeeeeebbbbebebbbbbeeeeeebeeeeebeebebeeeebeeee:
Contact : bb b b
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[assembly_id:1]
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