Protein Model on 4gl2_B_1_E_1
(TEMPLATE: 
4gl2
)Protein Model on 4gl2_B_1_E_1
(TEMPLATE: 4gl2
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [615 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_HUMAN | |
| 2 | b | E 1 (F) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3') | 298N 299Q(K) 300I(V) 325S 326G 347T 349Q 350I 353N 507Q 510E 511Q 514V(I) 635K 636T 637R 662T(I) 663G 664R(A) 665G 667T(S) 668N(S) 675L(Q) 678Q 699V 827E 829C(M) 830H 878K(V) 879Y(H) 906S(K) (identity: 61.3 %/37.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4gl2_B_1 identity=37.9% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE---RHGYRVTGISGATAENVPVEQIVE: 339
:* ** * * ** *** *** ******* * * ** ** *** * ** * * * *** * ** * :
4gl2_B_1 9:RPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ---LFRKEFQPFLKKWYRVIGLSGXXXLKISFPEVVK: 105
SecStr : HHHHHHHHHHHSS EEEE SSTTHHHHHHHHHHHHHHHHHHHT B EES HHHHHH---HHHHTHHHHHTTTS EEEE --- HHHHHH:
ExpBur :eebbebbbebbbeeebbbbbbeeebbbeebbbebbeebbeebeeeeeeeebbbbbebebbbeb---beeebbeeebeeebebebbbe---eeeebeebbe:
Contact : bbb bb
queryA 340:NNDIIILTPQILVNNLKKGTIP-----SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDY: 426
: **** * *** * * ** * * * **** * * ** ** ** *** **** ***** *** * * :
4gl2_B_1 106:SCDIIISTAQILENSLLNXXXXXXXGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKXXXXVIPLPQILGLTASPGVGGATKQAKAEEH: 205
SecStr :H SEEEEEHHHHHHHT ------- GGG SEEEES GGG TT HHHHHHHHHHHHHHHHHHHH ---- EEEEEES S SSHHHHHHH:
ExpBur :ebebbbbbbeebbebbee-------ebebbebbbbbbbbbbebeeeeebbebbbebbeebebbeeeee----eeeebbbbbbbbbbbbeeeeeeeebeee:
Contact : b bb b
queryA 427:ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP: 526
:* **** *** * *** ** * * * * ** * * **** **** * :
4gl2_B_1 206:ILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIXXXXXXXPFKEKLLEIMTRIQTYCQ-----MSPMS-----DFGTQPYEQWAIQMEKKA----AK: 291
SecStr :HHHHHHHHT S TTHHHHHHHS EEEEE ------- HHHHHHHHHHHHHHHHT----- SS----- TTSHHHHHHHHHHHHHH----HH:
ExpBur :bbbbbbbbbbeebebbeeeeeebeeeeeebeeeebe-------ebeebbeebbeebbeebe-----beeeb-----ebeeeebbebbeeebeeb----be:
Contact : b bb b
queryA 527:DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF-------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLED: 613
: * * ****** ** * ** ** * * * ** * * * * * * ** :
4gl2_B_1 292:EGNRKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFXXXXXXXXXXXXLDETDRFLMTLFFENNKMLKRLAENPXXXNEKLTK: 385
SecStr :HT TTTHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHH ------------ HHHHHHHHHHHHHHHHHHHHHS --- THHHH:
ExpBur :eeeeeebbb------bbbbebbbbbbebbeebebebbbebbeebbeebbebee------------eeebbebbeebbeeeeeebeeebeee---eebbee:
queryA 614:LCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN: 710
:* * * * * * *** ** ** * * * * * * ** ** * * **** ** ** ** **:
4gl2_B_1 386:LRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVXXKAHHLIGAGHSSEFKPMTQNEQKEVISKFR-TGKXXLLIATTVAEEGLDIKECN: 484
SecStr :HHHHHHHHHHHSS TTEEEE SSHHHHHHHHHHHHSSS TT -- EEE S SSSS HHHHHHHHHHHH-HT -- EEEES SS :
ExpBur :beebbeebeeeeeebbbbbbbbeebebbebbbbbbeeeeebeeb--ebebbbbeeeeeeeeebeeeebeebbeebe-eee--bebbbbeebebbeeeebb:
Contact : bbb bbbb bb b b b
queryA 711:LVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK: 806
: ** * * * * * * ** * * * **** * * **** * * *** * ** :
4gl2_B_1 485:IVIRYGLVTNEIAMVQARGXXXXDESTYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKXXXXXXXXXXXXPSL: 584
SecStr : EEES HHHHHHHH ---- EEEEE SSSTHHHHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHHHH ------------ :
ExpBur :bbbbbbbeeebbbbbbbbe----eebbbbbbbeeeeebeeebeebeebbebbeebbeebeebeeeebeeebeeebeebbeeeeee------------eee:
queryA 807:-KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTL: 904
: ** * *** * *** * *** * * * * ** * ** *** :
4gl2_B_1 585:ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRXXXXXXXXXXXXXXXGEIIC---KCGQAWGTMMVHXXXXLPCLKIRNFVVVFKNNSTKKQ: 681
SecStr : BB TTSS BGGG EEETTTEEE HHHHHH EE --------------- EEE ---SSS EEEEE ---- EEE GGG EEE SSS EEE:
ExpBur :bbbbbbbbeeebbebebbebeeeeebbbeeeebeebbeee---------------eebbb---ebbbebbebeee----ebbbebbbbbbbbeeeeeeee:
Contact : b bb bb
queryA 905:YSKW: 908
:* **:
4gl2_B_1 682:YKKW: 685
SecStr : SSG:
ExpBur :beeb:
Contact : b
|
[assembly_id:2]
[help]